BuildGroups.py
IdentifyOrthologs.py
LICENSE.txt
PropagateGroups.py
README.md
inparanoid2.pl
setup.py
PyParanoid.egg-info/PKG-INFO
PyParanoid.egg-info/SOURCES.txt
PyParanoid.egg-info/dependency_links.txt
PyParanoid.egg-info/requires.txt
PyParanoid.egg-info/top_level.txt
analysis_ipython/Build_Genome_Database.ipynb
analysis_ipython/ClusteringStats.ipynb
analysis_ipython/CompareStrains.ipynb
analysis_ipython/CustomPieChartTree.ipynb
analysis_ipython/HomologPresenceTree.ipynb
analysis_ipython/PlotMultipleGenomes.ipynb
pyparanoid/__init__.py
pyparanoid/genomedb.py
pyparanoid/genomeplot.py
pyparanoid/pyparanoid.py
src/Brass.txt
src/BrassClade.tre
src/comparison_strains.txt
src/corrcoef.txt
src/little_list.txt
src/locus_tag_list.txt
src/luxI.faa
src/pipeline.png
src/synteny.txt