Metadata-Version: 2.1
Name: HiCShuffle
Version: 1.1.0
Summary: FASTQ Shuffling Tool For Sanity Check in Hi-C Differential Contact Analysis
Home-page: https://github.com/hanjunlee21/HiCShuffle
Author: Hanjun Lee
Author-email: hanjun@mit.edu
License: MIT
Download-URL: https://github.com/hanjunlee21/HiCShuffle/archive/refs/tags/v.1.1.0.tar.gz
Description: # HiCShuffle
        
        [![PyPI version](https://badge.fury.io/py/HiCShuffle.svg)](https://badge.fury.io/py/HiCShuffle)
        [![DOI:10.1101/2021.09.23.459925](https://zenodo.org/badge/DOI/10.1101/2021.09.23.459925.svg)](https://doi.org/10.1101/2021.09.23.459925)
        [![MIT license](https://img.shields.io/badge/License-MIT-blue.svg)](https://lbesson.mit-license.org/)
        [![Linux](https://svgshare.com/i/Zhy.svg)](https://svgshare.com/i/Zhy.svg)
        
        **FASTQ Shuffling Tool For Sanity Check in Hi-C Differential Contact Analysis**
        
        ## Installation
        ```shell
        pip install hicshuffle
        ```
        
        ## Usage
        
        ### hicshuffle <command> [options]
        
        ```shell
        Commands:
            diff            FASTQ Shuffling Tool For Sanity Check in Hi-C Differential Contact Analysis
        Run panchip <command> -h for help on a specific command.
        
        HiCShuffle: FASTQ Shuffling Tool For Sanity Check in Hi-C Differential Contact Analysis
        
        positional arguments:
          command     Subcommand to run
        
        optional arguments:
          -h, --help  show this help message and exit
          --version   show program's version number and exit
        ```
        
        ### hicshuffle diff [-h] query_path_1 query_path_2 reference_path_1 reference_path_2 output_directory
        
        ```shell
        
        FASTQ Shuffling Tool For Sanity Check in Hi-C Differential Contact Analysis
        
        positional arguments:
          query_path_1      Path for READ1 of GZ-Compressed or Uncompressed Query FASTQ
          query_path_2      Path for READ2 of GZ-Compressed or Uncompressed Query FASTQ
          reference_path_1  Path for READ1 of GZ-Compressed or Uncompressed Reference FASTQ
          reference_path_2  Path for READ2 of GZ-Compressed or Uncompressed Reference FASTQ
          output_directory  Output Directory... HiCShuffle Will Generate Output Directory If Not Existent
        
        optional arguments:
          -h, --help         show this help message and exit
        ```
        
Keywords: hi-c,qc
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.0
Classifier: Programming Language :: Python :: 3.1
Classifier: Programming Language :: Python :: 3.2
Classifier: Programming Language :: Python :: 3.3
Classifier: Programming Language :: Python :: 3.4
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Awk
Classifier: Programming Language :: Unix Shell
Description-Content-Type: text/markdown
