.gitignore
.project
.pydevproject
Dockerfile
LICENSE
MANIFEST.in
README.md
debug.py
setup.cfg
setup.py
cpdseqer/CategoryItem.py
cpdseqer/DinucleotideItem.py
cpdseqer/__init__.py
cpdseqer/__main__.py
cpdseqer/__version__.py
cpdseqer/bam2dinucleotide_utils.py
cpdseqer/bowtie2_utils.py
cpdseqer/common_utils.py
cpdseqer/demultiplex_utils.py
cpdseqer/position.r
cpdseqer/position_utils.py
cpdseqer/report.rmd
cpdseqer/report_utils.py
cpdseqer/statistic_utils.py
cpdseqer.egg-info/PKG-INFO
cpdseqer.egg-info/SOURCES.txt
cpdseqer.egg-info/dependency_links.txt
cpdseqer.egg-info/entry_points.txt
cpdseqer.egg-info/not-zip-safe
cpdseqer.egg-info/requires.txt
cpdseqer.egg-info/top_level.txt
cpdseqer/data/Naked.1.count
cpdseqer/data/Naked.2.count
cpdseqer/data/barcode.txt
cpdseqer/data/case1.bed
cpdseqer/data/case2.bed
cpdseqer/data/chromInfo_hg19.txt
cpdseqer/data/chromInfo_hg38.txt
cpdseqer/data/ctrl1.bed
cpdseqer/data/ctrl2.bed
cpdseqer/data/hg38_promoter.bed
cpdseqer/data/hg38_tf.bed
cpdseqer/data/listfile.txt
cpdseqer/data/nucleosome_hg19_interval.zip
cpdseqer/data/nucleosome_hg38_interval.zip
cpdseqer/data/out_chr1_chr2.txt
scripts/debug_position.sh
scripts/debug_report.sh
scripts/test.sh
scripts/uninstall.sh
scripts/upload.sh