Configuration documents for BioBlend

BioBlend

class bioblend.NullHandler(level=0)

Initializes the instance - basically setting the formatter to None and the filter list to empty.

emit(record)

bioblend.get_version()

Returns a string with the current version of the library (e.g., “0.2.0”)

bioblend.init_logging()

Initialize BioBlend’s logging from a configuration file.

bioblend.set_file_logger(name, filepath, level=20, format_string=None)

bioblend.set_stream_logger(name, level=10, format_string=None)

Config

class bioblend.config.Config(path=None, fp=None, do_load=True)

BioBlend allows library-wide configuration to be set in external files. These configuration files can be used to specify access keys, for example. By default we use two locations for the BioBlend configurations:

• System wide: /etc/bioblend.cfg
• Individual user: ~/.bioblend (which works on both Windows and Unix)

get(section, name, default=None)

get_value(section, name, default=None)

getbool(section, name, default=False)

getfloat(section, name, default=0.0)

getint(section, name, default=0)