Metadata-Version: 2.1
Name: cooltools
Version: 0.3.0
Summary: Analysis tools for genomic interaction data stored in .cool format
Home-page: https://github.com/mirnylab/cooltools
Author: Mirny Lab
Author-email: espresso@mit.edu
License: MIT
Description: # cooltools
        
        [![Build Status](https://travis-ci.org/mirnylab/cooltools.svg?branch=master)](https://travis-ci.org/mirnylab/cooltools)
        [![Documentation Status](https://readthedocs.org/projects/cooltools/badge/?version=latest)](https://cooltools.readthedocs.io/en/latest/?badge=latest)
        
        The tools for your .cool's
        
        ## Calling compartments
        
        To call compartments, use `cooltools` to calculate the first three eigenvectors
        across the matrix. 
        
        ```
            cooltools call-compartments ${fullfile}::/resolutions/100000 --out-prefix $filename;
        ```
        
        Sample output:
        
        ```
        chrom   start   end     E1      E2      E3
        1       0       100000
        ...
        1       3000000 3100000 3.009943538549052       2.762190276669322       0.13578728460826148
        ...
        ```
        
Keywords: genomics,bioinformatics,Hi-C,analysis,cooler
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.4
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Description-Content-Type: text/markdown
