.gitattributes
.gitignore
CHANGELOG.md
LICENSE
MANIFEST.in
README.md
codecov.yml
data.zip
mkdocs.yml
pyproject.toml
requirements.txt
tox.ini
.github/copilot-instructions.md
.github/instructions/mermaid.instructions.md
.github/workflows/docs.yml
.github/workflows/test_and_deploy.yml
.github/workflows/test_and_deploy_testpypi.yml
.github/workflows/test_and_deploy_testpypi.yml.old
docs/hcs-ngff-conversion.md
docs/index.md
docs/install.md
docs/usage.md
docs/css/material.css
docs/diagrams/hcs-ngff-bounded-concurrency.mmd
docs/diagrams/hcs-ngff-conversion-workflow.mmd
scripts/activate.bat
scripts/activate.sh
src/czitools/__init__.py
src/czitools/_version.py
src/czitools.egg-info/PKG-INFO
src/czitools.egg-info/SOURCES.txt
src/czitools.egg-info/dependency_links.txt
src/czitools.egg-info/entry_points.txt
src/czitools.egg-info/requires.txt
src/czitools.egg-info/scm_file_list.json
src/czitools.egg-info/scm_version.json
src/czitools.egg-info/top_level.txt
src/czitools/analysis_tools/__init__.py
src/czitools/analysis_tools/hcs_analysis.py
src/czitools/analysis_tools/plotting.py
src/czitools/analysis_tools/processing.py
src/czitools/export_tools/__init__.py
src/czitools/export_tools/_logging.py
src/czitools/export_tools/conversion.py
src/czitools/export_tools/display.py
src/czitools/export_tools/gui.py
src/czitools/export_tools/plate.py
src/czitools/export_tools/resolver.py
src/czitools/export_tools/validation.py
src/czitools/metadata_tools/__init__.py
src/czitools/metadata_tools/add_metadata.py
src/czitools/metadata_tools/attachment.py
src/czitools/metadata_tools/boundingbox.py
src/czitools/metadata_tools/channel.py
src/czitools/metadata_tools/czi_metadata.py
src/czitools/metadata_tools/detector.py
src/czitools/metadata_tools/dimension.py
src/czitools/metadata_tools/hcs.py
src/czitools/metadata_tools/helper.py
src/czitools/metadata_tools/microscope.py
src/czitools/metadata_tools/objective.py
src/czitools/metadata_tools/sample.py
src/czitools/metadata_tools/scaling.py
src/czitools/metadata_tools/scene.py
src/czitools/read_tools/__init__.py
src/czitools/read_tools/_helpers.py
src/czitools/read_tools/array6d.py
src/czitools/read_tools/attachments.py
src/czitools/read_tools/field_well.py
src/czitools/read_tools/pyramid.py
src/czitools/read_tools/read_tools.py
src/czitools/read_tools/stacks.py
src/czitools/read_tools/tiles.py
src/czitools/utils/__init__.py
src/czitools/utils/box.py
src/czitools/utils/hcs_tools.py
src/czitools/utils/logging_tools.py
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src/czitools/utils/napari_helpers.py
src/czitools/utils/napari_tools.py
src/czitools/utils/ndv_tools.py
src/czitools/utils/pixels.py
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src/czitools/visu_tools/__init__.py
src/czitools/visu_tools/vis_tools.py