LICENSE
MANIFEST.in
README.md
setup.py
pipeline/__init__.py
pipeline/code/__init__.py
pipeline/code/dintegrate/__init__.py
pipeline/code/dintegrate/data_loader.py
pipeline/code/dintegrate/integrate_config.py
pipeline/code/dintegrate/main.py
pipeline/code/dintegrate/utils.py
pipeline/code/dnn/__init__.py
pipeline/code/dnn/analyzer.py
pipeline/code/dnn/dataloader.py
pipeline/code/dnn/main.py
pipeline/code/dnn/models.py
pipeline/code/dnn/pipeline.py
pipeline/code/dnn/config/__init__.py
pipeline/code/dnn/config/logger.py
pipeline/code/dnn/config/parse.py
pipeline/code/dpreprocess/__init__.py
pipeline/code/dpreprocess/ahba_.py
pipeline/code/dpreprocess/sn_.py
pipeline/code/graph_walk/__init__.py
pipeline/code/graph_walk/run.py
pipeline/code/graph_walk/connectomeembeddings/__init__.py
pipeline/code/graph_walk/connectomeembeddings/connectome_embed_nature.py
pipeline/code/graph_walk/connectomeembeddings/node2vec.py
pipeline/run_pipeline/__init__.py
pipeline/run_pipeline/run_sn.py
transbrain/__init__.py
transbrain/atlas.py
transbrain/base.py
transbrain/config.py
transbrain/surf.py
transbrain/trans.py
transbrain/vis.py
transbrain.egg-info/PKG-INFO
transbrain.egg-info/SOURCES.txt
transbrain.egg-info/dependency_links.txt
transbrain.egg-info/requires.txt
transbrain.egg-info/top_level.txt
transbrain/.ipynb_checkpoints/__init__-checkpoint.py
transbrain/.ipynb_checkpoints/atlas-checkpoint.py
transbrain/.ipynb_checkpoints/base-checkpoint.py
transbrain/.ipynb_checkpoints/trans-checkpoint.py
transbrain/__pycache__/__init__.cpython-311.pyc
transbrain/__pycache__/__init__.cpython-38.pyc
transbrain/__pycache__/atlas.cpython-311.pyc
transbrain/__pycache__/atlas.cpython-38.pyc
transbrain/__pycache__/base.cpython-311.pyc
transbrain/__pycache__/base.cpython-38.pyc
transbrain/__pycache__/config.cpython-311.pyc
transbrain/__pycache__/config.cpython-38.pyc
transbrain/__pycache__/surf.cpython-38.pyc
transbrain/__pycache__/tb_config.cpython-38.pyc
transbrain/__pycache__/trans.cpython-311.pyc
transbrain/__pycache__/trans.cpython-38.pyc
transbrain/__pycache__/vis.cpython-38.pyc
transbrain/atlas/BNA_subregions.xlsx
transbrain/atlas/aal_atlas.csv
transbrain/atlas/aal_atlas_2mm_symmetry.nii.gz
transbrain/atlas/allensn_atlas_2mm.nii.gz
transbrain/atlas/bn_atlas.csv
transbrain/atlas/bn_atlas_2mm_symmetry.nii.gz
transbrain/atlas/dk_atlas.csv
transbrain/atlas/dk_atlas_2mm_symmetry.nii.gz
transbrain/atlas/mni152_t1_1mm_brain.nii.gz
transbrain/atlas/mni152nlin6_res-2x2x2_t1w.nii.gz
transbrain/atlas/mouse_atlas.csv
transbrain/atlas/mouse_atlas.nii.gz
transbrain/atlas/mouse_atlas_0.2mm.nii.gz
transbrain/atlas/p56_annotation.nii.gz
transbrain/atlas/p56_atlas.nii.gz
transbrain/atlas/p56_atlas_0.2mm.nii.gz
transbrain/atlas/roi_of_bn_atlas.xlsx
transbrain/atlas/roi_of_mouse_atlas.xlsx
transbrain/atlas/sn_atlas.csv
transbrain/atlas/.ipynb_checkpoints/aalatlas-checkpoint.csv
transbrain/atlas/.ipynb_checkpoints/bnatlas-checkpoint.csv
transbrain/atlas/.ipynb_checkpoints/dkatlas-checkpoint.csv
transbrain/exampledata/human/human_example_phenotype_data.nii.gz
transbrain/exampledata/human/aal/human_aal_all_example_data.csv
transbrain/exampledata/human/aal/human_aal_cortical_example_data.csv
transbrain/exampledata/human/aal/human_aal_subcortical_example_data.csv
transbrain/exampledata/human/aal/.ipynb_checkpoints/human_aal_cortical_example_data-checkpoint.csv
transbrain/exampledata/human/aal/.ipynb_checkpoints/human_aal_subcortical_example_data-checkpoint.csv
transbrain/exampledata/human/bn/human_bn_all_example_data.csv
transbrain/exampledata/human/bn/human_bn_cortical_example_data.csv
transbrain/exampledata/human/bn/human_bn_subcortical_example_data.csv
transbrain/exampledata/human/bn/.ipynb_checkpoints/Human_BN_all_example_data-checkpoint.csv
transbrain/exampledata/human/bn/.ipynb_checkpoints/Human_BN_cortical_example_data-checkpoint.csv
transbrain/exampledata/human/bn/.ipynb_checkpoints/Human_BN_subcortical_example_data-checkpoint.csv
transbrain/exampledata/human/dk/human_dk_all_example_data.csv
transbrain/exampledata/human/dk/human_dk_cortical_example_data.csv
transbrain/exampledata/human/dk/human_dk_subcortical_example_data.csv
transbrain/exampledata/mouse/mouse_all_example_data.csv
transbrain/exampledata/mouse/mouse_cortical_example_data.csv
transbrain/exampledata/mouse/mouse_example_phenotype_data.nii.gz
transbrain/exampledata/mouse/mouse_example_phenotype_data_0.2mm.nii.gz
transbrain/exampledata/mouse/mouse_subcortical_example_data.csv
transbrain/graphembeddings/aal_p0.01_q0.1_graph_embeddings.pkl
transbrain/graphembeddings/bn_p0.01_q0.1_graph_embeddings.pkl
transbrain/graphembeddings/dk_p0.01_q0.1_graph_embeddings.pkl
transbrain/vis_file/100307.BN_Atlas.32k_fs_LR.dlabel.nii
transbrain/vis_file/L.atlasroi.32k_fs_LR.shape.gii
transbrain/vis_file/Q1-Q6_R440.sulc.32k_fs_LR.dscalar.nii
transbrain/vis_file/R.atlasroi.32k_fs_LR.shape.gii
transbrain/vis_file/S1200.L.midthickness_MSMAll.32k_fs_LR.surf.gii
transbrain/vis_file/S1200.L.very_inflated_MSMAll.32k_fs_LR.surf.gii
transbrain/vis_file/S1200.R.midthickness_MSMAll.32k_fs_LR.surf.gii
transbrain/vis_file/S1200.R.very_inflated_MSMAll.32k_fs_LR.surf.gii
transbrain/vis_file/S1200.sulc_MSMAll.32k_fs_LR.dscalar.nii