Metadata-Version: 2.1
Name: bseq
Version: 1.0.1
Summary: Python package for handling biological sequences and alignments
Home-page: https://bitbucket.org/nigevogen/bseq
Author: Kent Kawashima
Author-email: kentkawashima@nig.ac.jp
License: UNKNOWN
Description: # bseq
        Python package for handling biological sequences and alignments
        
        # Quickstart
        
        ## Install bseq
        ```bash
        pip install bseq
        ```
        
        ## Nucleotide sequence into FASTA format
        ```python
        from bseq.sequence import NuclSequence
        seq = NuclSequence('test_seq_name', 'GATTACA', description='Test nucleotide sequence')
        print(seq.fasta_format())
        ```
        
        ## Import alignment from file
        ```python
        from bseq.reader import read_fasta_alignment
        aln = read_fasta_alignment('/Users/Me/Downloads/seq.aln.fasta', 
                                   seq_type='nucleotide', name='test_alignment', 
                                   description='Test alignment for bseq')
        ```
        
        # Overview
        bseq helps biologists import and manipulate biological sequences such as nucleotides,
        amino acids, and codons. Unlike other bioinformatics packages in Python, bseq solely focuses
        on analyzing and manipulating sequences and alignments.
        
        # Dependencies
        bseq uses [numpy](http://www.numpy.org) for many alignment operations, and [nose](https://nose.readthedocs.io/en/latest/) to test its source code. When using `pip` to install `bseq`, pip will automatically install `numpy` and `nose`.
        
Platform: UNKNOWN
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: Apache Software License
Classifier: Operating System :: OS Independent
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Description-Content-Type: text/markdown
