MANIFEST.in
README.md
setup.py
/Users/andy/github/PyMaSC/PyMaSC/bacore/bitarray.c
/Users/andy/github/PyMaSC/PyMaSC/bacore/mscc.c
/Users/andy/github/PyMaSC/PyMaSC/core/mappability.c
/Users/andy/github/PyMaSC/PyMaSC/core/mscc.c
/Users/andy/github/PyMaSC/PyMaSC/core/ncc.c
/Users/andy/github/PyMaSC/PyMaSC/core/readlen.c
/Users/andy/github/PyMaSC/PyMaSC/reader/bigwig.c
/Users/andy/github/PyMaSC/PyMaSC/reader/bx/bbi_file.c
/Users/andy/github/PyMaSC/PyMaSC/reader/bx/bigwig_file.c
/Users/andy/github/PyMaSC/PyMaSC/reader/bx/bpt_file.c
/Users/andy/github/PyMaSC/PyMaSC/utils/bx/binary_file.c
PyMaSC/__init__.py
PyMaSC/calcmappablelen.py
PyMaSC/plot.py
PyMaSC/pymasc.py
PyMaSC.egg-info/PKG-INFO
PyMaSC.egg-info/SOURCES.txt
PyMaSC.egg-info/dependency_links.txt
PyMaSC.egg-info/entry_points.txt
PyMaSC.egg-info/requires.txt
PyMaSC.egg-info/top_level.txt
PyMaSC/bacore/__init__.py
PyMaSC/bacore/bitarray.pxd
PyMaSC/bacore/bitarray.pyx
PyMaSC/bacore/bitarray_2.c
PyMaSC/bacore/bitarray_3.c
PyMaSC/bacore/mscc.pyx
PyMaSC/bacore/mscc_2.c
PyMaSC/bacore/mscc_3.c
PyMaSC/core/__init__.py
PyMaSC/core/mappability.pyx
PyMaSC/core/mappability_2.c
PyMaSC/core/mappability_3.c
PyMaSC/core/mscc.pyx
PyMaSC/core/mscc_2.c
PyMaSC/core/mscc_3.c
PyMaSC/core/ncc.pxd
PyMaSC/core/ncc.pyx
PyMaSC/core/ncc_2.c
PyMaSC/core/ncc_3.c
PyMaSC/core/readlen.pyx
PyMaSC/core/readlen_2.c
PyMaSC/core/readlen_3.c
PyMaSC/core/utils.pxd
PyMaSC/handler/__init__.py
PyMaSC/handler/bamasc.py
PyMaSC/handler/mappability.py
PyMaSC/handler/masc.py
PyMaSC/handler/masc_noindex_worker.py
PyMaSC/handler/masc_worker.py
PyMaSC/handler/result.py
PyMaSC/output/__init__.py
PyMaSC/output/figure.py
PyMaSC/output/stats.py
PyMaSC/reader/__init__.py
PyMaSC/reader/bigwig.pxd
PyMaSC/reader/bigwig.pyx
PyMaSC/reader/bigwig_2.c
PyMaSC/reader/bigwig_3.c
PyMaSC/reader/bx/__init__.py
PyMaSC/reader/bx/bbi_file.pxd
PyMaSC/reader/bx/bbi_file.pyx
PyMaSC/reader/bx/bbi_file_2.c
PyMaSC/reader/bx/bbi_file_3.c
PyMaSC/reader/bx/bigwig_file.pxd
PyMaSC/reader/bx/bigwig_file.pyx
PyMaSC/reader/bx/bigwig_file_2.c
PyMaSC/reader/bx/bigwig_file_3.c
PyMaSC/reader/bx/bpt_file.pxd
PyMaSC/reader/bx/bpt_file.pyx
PyMaSC/reader/bx/bpt_file_2.c
PyMaSC/reader/bx/bpt_file_3.c
PyMaSC/utils/__init__.py
PyMaSC/utils/calc.py
PyMaSC/utils/compatible.py
PyMaSC/utils/logfmt.py
PyMaSC/utils/output.py
PyMaSC/utils/parsearg.py
PyMaSC/utils/progress.py
PyMaSC/utils/bx/__init__.py
PyMaSC/utils/bx/binary_file.pxd
PyMaSC/utils/bx/binary_file.pyx
PyMaSC/utils/bx/binary_file_2.c
PyMaSC/utils/bx/binary_file_3.c
external/bitcnt.h
external/BitArray/AUTHORS
external/BitArray/LICENSE
external/BitArray/Makefile
external/BitArray/README.md
external/BitArray/bit_array.c
external/BitArray/bit_array.h
external/BitArray/bit_macros.h
external/bx-python/lib/bx/__init__.py
external/bx-python/lib/bx/bbi/__init__.py
external/bx-python/lib/bx/bbi/bpt_file.pxd
external/bx-python/lib/bx/bbi/cirtree_file.pxd
external/bx-python/lib/bx/bbi/cirtree_file.pyx
external/bx-python/lib/bx/bbi/types.pxd