{
    "main": {
        "comments": "Experimental light field image of giant unilamellar vesicle (GUV) recorded by Rudolf Oldenbourg, Marine Biological Laboratory Woods Hole MA, in 2019"
    },
    "calibrate": {
        "radiometry_frame_file": "Radiometry_GUVExperim1.tif",
        "dark_frame_file": "DarkFrame_GUVExperim1.tif",
        "output_filename": "Calibration_GUVExperim1-15.lfc",
        "synthetic_lf": false,
        "use_ray_optics": false,
        "voxels_as_points": false,
        "align_radiometry": false,
        "ulens_pitch": 100.0,
        "pixel_size": 6.5,
        "ulens_focal_length": 2500.0,
        "ulens_focal_distance": 2500.0,
        "objective_magnification": 60,
        "objective_na": 1.2,
        "tubelens_focal_length": 200.0,
        "center_wavelength": 593.0,
        "medium_index": 1.35,
        "ulens_fill_factor": 1.0,
        "pixel_fill_factor": 1.0,
        "ulens_profile": "rect",
        "num_slices": 15,
        "um_per_slice": 1.0,
        "supersample": 3,
        "z_center": 0.0,
        "affine_alignment": false,
        "isometry_alignment": false,
        "chief_ray_image": false,
        "crop_center_lenslets": false,
        "skip_alignment": false,
        "skip_subpixel_alignment": false,
        "num_threads": 10,
        "pinhole_filename": "",
        "lenslet_filename": "",
        "debug": false
    },
    "rectify": {
        "input_file": "Lightfield_GUVExperim1.tif",
        "calibration_file": "Calibration_GUVExperim1-15.lfc",
        "output_filename": "Rectified15.png",
        "subaperture": false,
        "output_pixels_per_lenslet": ""
    },
    "deconvolve": {
        "input_file": "Lightfield_GUVExperim1.tif",
        "calibration_file": "Calibration_GUVExperim1-15.lfc",
        "output_filename": "output_stack-15.tif",
        "solver": "rl",
        "alpha": 1.6,
        "multiscale_smoothing": false,
        "save_multiscale": false,
        "regularization_lambda": 0.0,
        "regularization_lambda2": 0.0,
        "max_iter": 15,
        "conv_thresh": 0.0,
        "readnoise_variance": 0.0,
        "background_level": 1.0,
        "focalstack": false,
        "remove_grid": false,
        "pinhole_filename": "",
        "decon_type": "algebraic",
        "reg_factor": 100.0,
        "h5py_cov_filename": "tests/covariance_blocks.h5",
        "benchmark": false,
        "log_convergence": false
    },
    "hw": {
        "gpu_id": "Apple",
        "platform_id": "Apple M1 Max",
        "use_single_prec": true,
        "disable_gpu": false
    }
}