# OS
.DS_Store
.DS_Store?
._*
.Spotlight-V100
.Trashes
ehthumbs.db
Thumbs.db
desktop.ini
Icon?
$RECYCLE.BIN/
*.swp
*.swo

# Python
__pycache__/
*.py[cod]
*.pyo
*.pyd
*.so
build/
dist/
*.egg-info/
.eggs/
*.egg
*.whl
*.spec

# Environments
.venv/
.venv*/
.env
.envrc
.env.*
.conda/
.condarc
*.conda
.direnv/
.pdm.toml

# Test/coverage
.coverage
.coverage.*
.coverage/
htmlcov/
.tox/
.nox/
.pytest_cache/
.mypy_cache/
.ruff_cache/
.pytype/
.hypothesis/
.mutmut-cache/
.cache/
.noseids
nosetests.xml
test-results/
*.cover
*.prof
profile_default/
.benchmarks/
.mutmut-cache

# IDEs/editors
.idea/
.vscode/
.vscode-test/
*.code-workspace
*.sublime-project
*.sublime-workspace

# Docs
docs/_build/
site/
_build/
doctrees/
*.doctree

# JS/Node
node_modules/

# Data/Bioinformatics
*.bam
*.bai
*.cram
*.crai
*.sam
*.vcf
*.vcf.gz
*.fai
*.tar
*.tar.gz
*.h5
*.hdf5
*.sqlite
*.sqlite3
*.db
*.mtx
*.loom
*.bw
*.rda
*.rds
*.csv.gz
*.tsv.gz
results/
output/
out/
.snakemake/
*.singularity
*.sif

# Misc
*.log
*.out
*.err
*.pid
*.tmp
*.temp
*.bak
*.orig
*.rej
*~

# Secrets
secrets.*
*.key
*.pem
.secret
.secret.*
session.sqlite

# Local/project dev data
.tmp_home/
tmp/
tmp*/
.local/
openapitools.json

# bijux-cli
comments.txt
artifacts/
artifacts
