LICENSE
MANIFEST.in
README.md
setup.py
src/DAJIN2/__init__.py
src/DAJIN2/gui.py
src/DAJIN2/main.py
src/DAJIN2/template_igvjs.html
src/DAJIN2/view.py
src/DAJIN2.egg-info/PKG-INFO
src/DAJIN2.egg-info/SOURCES.txt
src/DAJIN2.egg-info/dependency_links.txt
src/DAJIN2.egg-info/entry_points.txt
src/DAJIN2.egg-info/requires.txt
src/DAJIN2.egg-info/top_level.txt
src/DAJIN2/core/__init__.py
src/DAJIN2/core/core_execute.py
src/DAJIN2/core/classification/__init__.py
src/DAJIN2/core/classification/classify.py
src/DAJIN2/core/classification/tmp_detect_sv.py
src/DAJIN2/core/clustering/__init__.py
src/DAJIN2/core/clustering/clustering.py
src/DAJIN2/core/clustering/make_kmer.py
src/DAJIN2/core/clustering/make_score.py
src/DAJIN2/core/clustering/merge_clusters.py
src/DAJIN2/core/clustering/return_labels.py
src/DAJIN2/core/consensus/__init__.py
src/DAJIN2/core/consensus/consensus.py
src/DAJIN2/core/consensus/extract_mutation_loci_by_labels.py
src/DAJIN2/core/consensus/subset.py
src/DAJIN2/core/preprocess/__init__.py
src/DAJIN2/core/preprocess/align.py
src/DAJIN2/core/preprocess/call_midsv.py
src/DAJIN2/core/preprocess/check_caches.py
src/DAJIN2/core/preprocess/extract_errors_in_homopolymer.py
src/DAJIN2/core/preprocess/extract_knockin_loci.py
src/DAJIN2/core/preprocess/extract_mutation_loci.py
src/DAJIN2/core/preprocess/format_inputs.py
src/DAJIN2/core/preprocess/generate_insertion_fasta.py
src/DAJIN2/core/preprocess/get_index_mapping.py
src/DAJIN2/core/preprocess/tmp_extract_errors_in_knockin_loci.py.py
src/DAJIN2/core/preprocess/tmp_extract_mutation_loci_with_indexmapping.py
src/DAJIN2/core/preprocess/tmp_generate_truncated_fasta.py
src/DAJIN2/core/preprocess/tmp_replace_NtoD.py
src/DAJIN2/core/report/__init__.py
src/DAJIN2/core/report/remove_microhomology.py
src/DAJIN2/core/report/report_bam.py
src/DAJIN2/core/report/report_files.py
src/DAJIN2/core/report/report_mutation.py
src/DAJIN2/core/report/reverse_sam.py
src/DAJIN2/postprocess/__init__.py
src/DAJIN2/postprocess/report.py
src/DAJIN2/preprocess/__init__.py
src/DAJIN2/preprocess/validate_inputs.py
src/DAJIN2/static/css/style.css
src/DAJIN2/templates/index.html