LICENSE.rst
MANIFEST.in
README.rst
pyproject.toml
setup.cfg
setup.py
src/PhyloJunction.egg-info/PKG-INFO
src/PhyloJunction.egg-info/SOURCES.txt
src/PhyloJunction.egg-info/dependency_links.txt
src/PhyloJunction.egg-info/entry_points.txt
src/PhyloJunction.egg-info/not-zip-safe
src/PhyloJunction.egg-info/requires.txt
src/PhyloJunction.egg-info/top_level.txt
src/phylojunction/__init__.py
src/phylojunction/__main__.py
src/phylojunction/calculation/__init__.py
src/phylojunction/calculation/discrete_sse.py
src/phylojunction/calculation/discrete_sse.pyi
src/phylojunction/calculation/math_utils.py
src/phylojunction/calculation/math_utils.pyi
src/phylojunction/constant_function/__init__.py
src/phylojunction/constant_function/ct_function_read_tree.py
src/phylojunction/data/__init__.py
src/phylojunction/data/attribute_transition.py
src/phylojunction/data/sampled_ancestor.py
src/phylojunction/data/tree.py
src/phylojunction/data/tree.pyi
src/phylojunction/distribution/__init__.py
src/phylojunction/distribution/dn_discrete_sse.py
src/phylojunction/distribution/dn_discrete_sse.pyi
src/phylojunction/distribution/dn_parametric.py
src/phylojunction/distribution/dn_parametric.pyi
src/phylojunction/functionality/__init__.py
src/phylojunction/functionality/biogeo.py
src/phylojunction/functionality/event_series.py
src/phylojunction/functionality/evol_event.py
src/phylojunction/functionality/feature_io.py
src/phylojunction/functionality/stoch_map.py
src/phylojunction/inference/__init__.py
src/phylojunction/inference/revbayes/__init__.py
src/phylojunction/inference/revbayes/rb_dn_parametric.py
src/phylojunction/inference/revbayes/rb_inference.py
src/phylojunction/interface/__init__.py
src/phylojunction/interface/pj_sandbox.py
src/phylojunction/interface/cmdbox/__init__.py
src/phylojunction/interface/cmdbox/cmd_parse.py
src/phylojunction/interface/cmdbox/cmd_parse.pyi
src/phylojunction/interface/cmdbox/cmd_parse_utils.py
src/phylojunction/interface/cmdbox/cmd_parse_utils.pyi
src/phylojunction/interface/grammar/__init__.py
src/phylojunction/interface/grammar/ct_fn_grammar.py
src/phylojunction/interface/grammar/ct_fn_treereader_makers.py
src/phylojunction/interface/grammar/det_fn_discrete_sse_makers.py
src/phylojunction/interface/grammar/det_fn_discrete_sse_makers.pyi
src/phylojunction/interface/grammar/det_fn_grammar.py
src/phylojunction/interface/grammar/det_fn_grammar.pyi
src/phylojunction/interface/grammar/det_fn_map_attribute.py
src/phylojunction/interface/grammar/dn_discrete_sse_makers.py
src/phylojunction/interface/grammar/dn_grammar.py
src/phylojunction/interface/grammar/dn_grammar.pyi
src/phylojunction/interface/pjcli/__init__.py
src/phylojunction/interface/pjcli/cli_plotting.py
src/phylojunction/interface/pjcli/pj_cli.py
src/phylojunction/interface/pysidegui/__init__.py
src/phylojunction/interface/pysidegui/content_main_window.py
src/phylojunction/interface/pysidegui/pj_gui.py
src/phylojunction/interface/pysidegui/images/icons/icon_clear.svg
src/phylojunction/interface/pysidegui/images/icons/icon_clear_over.svg
src/phylojunction/interface/pysidegui/images/icons/icon_clear_pressed.svg
src/phylojunction/interface/pysidegui/images/icons/icon_cmd_log.svg
src/phylojunction/interface/pysidegui/images/icons/icon_compare.svg
src/phylojunction/interface/pysidegui/images/icons/icon_covg.svg
src/phylojunction/interface/pysidegui/images/icons/icon_menu.svg
src/phylojunction/interface/pysidegui/images/icons/icon_pgm.svg
src/phylojunction/interface/pysidegui/images/icons/icon_settings.svg
src/phylojunction/interface/pysidegui/images/icons/icon_violins.svg
src/phylojunction/interface/pysidegui/images/icons/icon_warning.svg
src/phylojunction/interface/pysidegui/images/icons/pj_logo_icon.png
src/phylojunction/interface/pysidegui/pjguipages/__init__.py
src/phylojunction/interface/pysidegui/pjguipages/gui_pages.py
src/phylojunction/interface/pysidegui/pjguiwidgets/__init__.py
src/phylojunction/interface/pysidegui/pjguiwidgets/matplotlibwidget.py
src/phylojunction/interface/pysidegui/pjguiwidgets/pj_buttons.py
src/phylojunction/pgm/__init__.py
src/phylojunction/pgm/pgm.py
src/phylojunction/pgm/pgm.pyi
src/phylojunction/plotting/__init__.py
src/phylojunction/plotting/pj_draw.py
src/phylojunction/plotting/pj_draw.pyi
src/phylojunction/plotting/pj_organize.py
src/phylojunction/plotting/pj_organize.pyi
src/phylojunction/plotting/pj_seeing_colors.py
src/phylojunction/plotting/pj_testing_tree_plotting.py
src/phylojunction/readwrite/__init__.py
src/phylojunction/readwrite/pj_read.py
src/phylojunction/readwrite/pj_read.pyi
src/phylojunction/readwrite/pj_write.py
src/phylojunction/readwrite/pj_write.pyi
src/phylojunction/utility/__init__.py
src/phylojunction/utility/exception_classes.py
src/phylojunction/utility/exception_classes.pyi
src/phylojunction/utility/helper_functions.py
src/phylojunction/utility/helper_functions.pyi