.gitignore
.readthedocs.yaml
LICENSE
MANIFEST.in
README.md
__init__.py
mkdocs.yml
pyproject.toml
requirements.in
requirements.txt
setup.cfg
setup.py
.github/workflows/test_and_deploy.yml
OccuPy.egg-info/PKG-INFO
OccuPy.egg-info/SOURCES.txt
OccuPy.egg-info/dependency_links.txt
OccuPy.egg-info/entry_points.txt
OccuPy.egg-info/not-zip-safe
OccuPy.egg-info/requires.txt
OccuPy.egg-info/top_level.txt
docs/about.md
docs/index.md
docs/install.md
docs/Troubleshooting/chimX_trbl.md
docs/Troubleshooting/install_trbl.md
docs/Troubleshooting/other_trbl.md
docs/Tutorials/gui.md
docs/Tutorials/intro.md
docs/Tutorials/case/est_occ.md
docs/Tutorials/case/est_res.md
docs/Tutorials/case/modification.md
docs/Tutorials/case/soldef.md
docs/Tutorials/case/sub_mask.md
docs/Tutorials/case/supp_solv.md
docs/gallery/highres.md
docs/gallery/index.md
docs/gallery/mass.md
docs/gallery/membrane.md
docs/gallery/modification.md
docs/gallery/synthetic.md
docs/gallery/full/14085_1.png
docs/gallery/full/14085_2.png
docs/gallery/full/14085_3.png
docs/gallery/full/14085_4.png
docs/gallery/full/14085_5.png
docs/gallery/full/14085_6.png
docs/gallery/stylesheets/extra.css
docs/gallery/thumbs/actin.png
docs/gallery/thumbs/high-res.png
docs/gallery/thumbs/linux_thumb.png
docs/gallery/thumbs/mac_thumb.png
docs/gallery/thumbs/mass.png
docs/gallery/thumbs/membrane.png
docs/gallery/thumbs/modification.png
docs/gallery/thumbs/resolution.png
docs/gallery/thumbs/ribo.png
docs/gallery/thumbs/spike.png
docs/gallery/thumbs/synthetic.png
docs/gallery/thumbs/win_thumb.png
docs/stylesheets/extra.css
occupy_lib/__init__.py
occupy_lib/_version.py
occupy_lib/args.py
occupy_lib/estimate.py
occupy_lib/extras.py
occupy_lib/map_tools.py
occupy_lib/occupancy.py
occupy_lib/occupy.py
occupy_lib/occupy_gui.py
occupy_lib/percentile_maxima.py
occupy_lib/solvent.py
occupy_lib/vis.py
resources/chimX.png
resources/help.txt
resources/occupy_icon.png
resources/occupy_icon_small.png
tests/conftest.py
tests/test_something.py