Metadata-Version: 2.1
Name: KGWAS
Version: 0.0.1
Summary: KGWAS
Home-page: https://github.com/snap-stanford/KGWAS
Author: KGWAS Team
Author-email: kexinh@stanford.edu
License: MIT
Description-Content-Type: text/markdown
Requires-Dist: scikit-learn
Requires-Dist: pandas
Requires-Dist: numpy
Requires-Dist: scipy
Requires-Dist: tqdm
Requires-Dist: torch_geometric

# KGWAS: genetics discovery powered by functional genomics knowledge graph


### Installation

```bash
pip install kgwas
```

### How to use KGWAS


```python

from kgwas import KGWAS, KGWAS_Data
data = KGWAS_Data()
data.load_kg()

data.load_external_gwas(PATH)
data.process_gwas_file()
data.prepare_split()

run = KGWAS(data,
            weight_bias_track = True,
            device = device,
            proj_name = 'KGWAS',
            exp_name = exp_name,
            seed = seed)

run.initialize_model()
run.train(epoch = 10)
```


### Reproducing experiments


### Cite Us
