# Worktrees
.worktrees/

# Python
__pycache__/
*.py[cod]
*.pyo
.Python
build/
dist/
*.egg-info/
*.egg
.eggs/

# Virtual environments
.venv/
venv/
env/
ENV/

# Testing
.*cache/
.coverage*
coverage.xml
htmlcov/

# IDE
.idea/
*.swp
*.swo

# Jupyter
.ipynb_checkpoints/

# Distribution / packaging
*.tar.gz
*.whl
MANIFEST

# ReadTheDocs
/docs/_build/
/docs/jupyter_execute/
/docs/api/reference/

# Pooch dataset download caches (e.g. load_visium_mouse_colon_dataset())
/data/
/docs/tutorials/data/

# gseapy/EnrichR default output dir (e.g. destvi_utils.explore_gamma_space())
/docs/tutorials/test/

# OS
.DS_Store
Thumbs.db
/docs/architecture/
/docs/superpowers/
/.claude/
