2021-05-21 11:24 - INFO - demultiplex - Preparing to demultiplex reads
2021-05-21 11:24 - INFO - demultiplex - Total reads demultiplexed: 534
2021-05-21 11:24 - INFO - pipeline - Print log path: results/test_demultiplex/log.txt
2021-05-21 11:24 - INFO - pipeline - Print settings:
command: demultiplex
config_file: test_demultiplex-config.yaml
experiment: test_demultiplex
threads: 4
output_dir: results/test_demultiplex
path: results/test_demultiplex/
log: results/test_demultiplex/log.txt
summary_log: results/test_demultiplex/summary_log.txt
reads: ../data/input/example01.fastq
samples_txt: results/test_demultiplex/samples.txt
samples: ../data/input/example01.txt
samples_dict: {'E001_01': {'barcode': 'GAAG'}, 'E001_02': {'barcode': 'CTTT'}}
samples_info_yml: results/test_demultiplex/samples_info.yml
raw_path: results/test_demultiplex/raw_data/
barcode_length: 4
transposon_seq: ACAGGTTG
settings_pickle: results/test_demultiplex/settings.pickle
organism: genome
snakefile: /Users/emanuelburgos/Dropbox/Mandel_Lab/Projects/Project_Pyinseq/pyinseq/pyinseq/workflows/DemultiplexWorkflow/Snakefile
snakemake_cmd: snakemake --config experiment=test_demultiplex -s /Users/emanuelburgos/Dropbox/Mandel_Lab/Projects/Project_Pyinseq/pyinseq/pyinseq/workflows/DemultiplexWorkflow/Snakefile --cores 3
process_reads: True
process_sample_list: True
parse_genebank: False
generate_bowtie_index: False
write_trimmed_reads: True

2021-05-21 11:24 - INFO - pipeline - Print samples detail
E001_01:
  barcode: GAAG
  demultiplexed_reads: 252
E001_02:
  barcode: CTTT
  demultiplexed_reads: 274


