# macsyfinder 20230118.dev
# models : TFF-SF-0.0b2
# /home/bneron/Projects/GEM/macsyfinder/py311/bin/macsyfinder --db-type gembase --models-dir tests/data/models/ --models TFF-SF all -w 5 --sequence-db tests/data/base/gembase_w_slow_genome.fa --timeout 2 --out-dir functional_test_timeout --index-dir .
#
# WARNING: The replicon 'THHY002.0321.00001.C001' has been SKIPPED. Cannot be solved before timeout.
#
# Systems found:

system id = PSAV001.0321.00001.C001_T4P_12
model = TFF-SF/T4P
replicon = PSAV001.0321.00001.C001
clusters = [('PSAV001.0321.00001.C001_00876', 'T4P_fimT', 816), ('PSAV001.0321.00001.C001_00877', 'T4P_fimT', 817), ('PSAV001.0321.00001.C001_00878', 'T4P_pilV', 818), ('PSAV001.0321.00001.C001_00879', 'T4P_pilW', 819), ('PSAV001.0321.00001.C001_00880', 'T4P_pilX', 820), ('PSAV001.0321.00001.C001_00881', 'T4P_pilY', 821), ('PSAV001.0321.00001.C001_00882', 'T4P_pilE', 822)], [('PSAV001.0321.00001.C001_01018', 'T4P_pilD', 926), ('PSAV001.0321.00001.C001_01019', 'T4P_pilC', 927), ('PSAV001.0321.00001.C001_01020', 'T4P_pilB', 928), ('PSAV001.0321.00001.C001_01021', 'T4P_pilA', 929)], [('PSAV001.0321.00001.C001_05037', 'MSH_mshM', 4719), ('PSAV001.0321.00001.C001_05040', 'T4P_pilQ', 4722), ('PSAV001.0321.00001.C001_05041', 'T4P_pilP', 4723), ('PSAV001.0321.00001.C001_05042', 'T4P_pilO', 4724), ('PSAV001.0321.00001.C001_05043', 'T4P_pilN', 4725), ('PSAV001.0321.00001.C001_05044', 'T4P_pilM', 4726)], [('PSAV001.0321.00001.C001_04959', 'T4P_pilT', 4643)]
occ = 1
wholeness = 0.944
loci nb = 3
score = 12.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [PSAV001.0321.00001.C001_T2SS_2])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 2 (T4P_fimT, T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 1 (MSH_mshM)

neutral genes:

============================================================
system id = PSAV001.0321.00001.C001_T4P_6
model = TFF-SF/T4P
replicon = PSAV001.0321.00001.C001
clusters = [('PSAV001.0321.00001.C001_00876', 'T4P_fimT', 816), ('PSAV001.0321.00001.C001_00877', 'T4P_fimT', 817), ('PSAV001.0321.00001.C001_00878', 'T4P_pilV', 818), ('PSAV001.0321.00001.C001_00879', 'T4P_pilW', 819), ('PSAV001.0321.00001.C001_00880', 'T4P_pilX', 820), ('PSAV001.0321.00001.C001_00881', 'T4P_pilY', 821), ('PSAV001.0321.00001.C001_00882', 'T4P_pilE', 822)], [('PSAV001.0321.00001.C001_01018', 'T4P_pilD', 926), ('PSAV001.0321.00001.C001_01019', 'T4P_pilC', 927), ('PSAV001.0321.00001.C001_01020', 'T4P_pilB', 928), ('PSAV001.0321.00001.C001_01021', 'T4P_pilA', 929)], [('PSAV001.0321.00001.C001_05037', 'MSH_mshM', 4719), ('PSAV001.0321.00001.C001_05040', 'T4P_pilQ', 4722), ('PSAV001.0321.00001.C001_05041', 'T4P_pilP', 4723), ('PSAV001.0321.00001.C001_05042', 'T4P_pilO', 4724), ('PSAV001.0321.00001.C001_05043', 'T4P_pilN', 4725), ('PSAV001.0321.00001.C001_05044', 'T4P_pilM', 4726)]
occ = 1
wholeness = 0.889
loci nb = 3
score = 11.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [PSAV001.0321.00001.C001_T2SS_2])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 2 (T4P_fimT, T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 1 (MSH_mshM)

neutral genes:

============================================================
system id = PSAV001.0321.00001.C001_T4P_10
model = TFF-SF/T4P
replicon = PSAV001.0321.00001.C001
clusters = [('PSAV001.0321.00001.C001_00876', 'T4P_fimT', 816), ('PSAV001.0321.00001.C001_00877', 'T4P_fimT', 817), ('PSAV001.0321.00001.C001_00878', 'T4P_pilV', 818), ('PSAV001.0321.00001.C001_00879', 'T4P_pilW', 819), ('PSAV001.0321.00001.C001_00880', 'T4P_pilX', 820), ('PSAV001.0321.00001.C001_00881', 'T4P_pilY', 821), ('PSAV001.0321.00001.C001_00882', 'T4P_pilE', 822)], [('PSAV001.0321.00001.C001_05037', 'MSH_mshM', 4719), ('PSAV001.0321.00001.C001_05040', 'T4P_pilQ', 4722), ('PSAV001.0321.00001.C001_05041', 'T4P_pilP', 4723), ('PSAV001.0321.00001.C001_05042', 'T4P_pilO', 4724), ('PSAV001.0321.00001.C001_05043', 'T4P_pilN', 4725), ('PSAV001.0321.00001.C001_05044', 'T4P_pilM', 4726)], [('PSAV001.0321.00001.C001_04959', 'T4P_pilT', 4643)]
occ = 1
wholeness = 0.722
loci nb = 2
score = 8.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 2 (T4P_fimT, T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 1 (MSH_mshM)

neutral genes:

============================================================
system id = PSAV001.0321.00001.C001_T4P_4
model = TFF-SF/T4P
replicon = PSAV001.0321.00001.C001
clusters = [('PSAV001.0321.00001.C001_00876', 'T4P_fimT', 816), ('PSAV001.0321.00001.C001_00877', 'T4P_fimT', 817), ('PSAV001.0321.00001.C001_00878', 'T4P_pilV', 818), ('PSAV001.0321.00001.C001_00879', 'T4P_pilW', 819), ('PSAV001.0321.00001.C001_00880', 'T4P_pilX', 820), ('PSAV001.0321.00001.C001_00881', 'T4P_pilY', 821), ('PSAV001.0321.00001.C001_00882', 'T4P_pilE', 822)], [('PSAV001.0321.00001.C001_05037', 'MSH_mshM', 4719), ('PSAV001.0321.00001.C001_05040', 'T4P_pilQ', 4722), ('PSAV001.0321.00001.C001_05041', 'T4P_pilP', 4723), ('PSAV001.0321.00001.C001_05042', 'T4P_pilO', 4724), ('PSAV001.0321.00001.C001_05043', 'T4P_pilN', 4725), ('PSAV001.0321.00001.C001_05044', 'T4P_pilM', 4726)]
occ = 1
wholeness = 0.667
loci nb = 2
score = 8.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 2 (T4P_fimT, T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 1 (MSH_mshM)

neutral genes:

============================================================
system id = PSAV001.0321.00001.C001_T4P_9
model = TFF-SF/T4P
replicon = PSAV001.0321.00001.C001
clusters = [('PSAV001.0321.00001.C001_00876', 'T4P_fimT', 816), ('PSAV001.0321.00001.C001_00877', 'T4P_fimT', 817), ('PSAV001.0321.00001.C001_00878', 'T4P_pilV', 818), ('PSAV001.0321.00001.C001_00879', 'T4P_pilW', 819), ('PSAV001.0321.00001.C001_00880', 'T4P_pilX', 820), ('PSAV001.0321.00001.C001_00881', 'T4P_pilY', 821), ('PSAV001.0321.00001.C001_00882', 'T4P_pilE', 822)], [('PSAV001.0321.00001.C001_01018', 'T4P_pilD', 926), ('PSAV001.0321.00001.C001_01019', 'T4P_pilC', 927), ('PSAV001.0321.00001.C001_01020', 'T4P_pilB', 928), ('PSAV001.0321.00001.C001_01021', 'T4P_pilA', 929)], [('PSAV001.0321.00001.C001_04959', 'T4P_pilT', 4643)]
occ = 1
wholeness = 0.611
loci nb = 2
score = 7.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 0 ()
	- T4P_pilQ: 0 ()
	- T4P_pilN: 0 ()
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [PSAV001.0321.00001.C001_T2SS_2])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 2 (T4P_fimT, T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = PSAV001.0321.00001.C001_T4P_3
model = TFF-SF/T4P
replicon = PSAV001.0321.00001.C001
clusters = [('PSAV001.0321.00001.C001_00876', 'T4P_fimT', 816), ('PSAV001.0321.00001.C001_00877', 'T4P_fimT', 817), ('PSAV001.0321.00001.C001_00878', 'T4P_pilV', 818), ('PSAV001.0321.00001.C001_00879', 'T4P_pilW', 819), ('PSAV001.0321.00001.C001_00880', 'T4P_pilX', 820), ('PSAV001.0321.00001.C001_00881', 'T4P_pilY', 821), ('PSAV001.0321.00001.C001_00882', 'T4P_pilE', 822)], [('PSAV001.0321.00001.C001_01018', 'T4P_pilD', 926), ('PSAV001.0321.00001.C001_01019', 'T4P_pilC', 927), ('PSAV001.0321.00001.C001_01020', 'T4P_pilB', 928), ('PSAV001.0321.00001.C001_01021', 'T4P_pilA', 929)]
occ = 1
wholeness = 0.556
loci nb = 2
score = 7.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 0 ()
	- T4P_pilQ: 0 ()
	- T4P_pilN: 0 ()
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [PSAV001.0321.00001.C001_T2SS_2])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 2 (T4P_fimT, T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = PSAV001.0321.00001.C001_T4P_11
model = TFF-SF/T4P
replicon = PSAV001.0321.00001.C001
clusters = [('PSAV001.0321.00001.C001_01018', 'T4P_pilD', 926), ('PSAV001.0321.00001.C001_01019', 'T4P_pilC', 927), ('PSAV001.0321.00001.C001_01020', 'T4P_pilB', 928), ('PSAV001.0321.00001.C001_01021', 'T4P_pilA', 929)], [('PSAV001.0321.00001.C001_05037', 'MSH_mshM', 4719), ('PSAV001.0321.00001.C001_05040', 'T4P_pilQ', 4722), ('PSAV001.0321.00001.C001_05041', 'T4P_pilP', 4723), ('PSAV001.0321.00001.C001_05042', 'T4P_pilO', 4724), ('PSAV001.0321.00001.C001_05043', 'T4P_pilN', 4725), ('PSAV001.0321.00001.C001_05044', 'T4P_pilM', 4726)], [('PSAV001.0321.00001.C001_04959', 'T4P_pilT', 4643)]
occ = 1
wholeness = 0.611
loci nb = 2
score = 8.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [PSAV001.0321.00001.C001_T2SS_2])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 1 (MSH_mshM)

neutral genes:

============================================================
system id = PSAV001.0321.00001.C001_T4P_5
model = TFF-SF/T4P
replicon = PSAV001.0321.00001.C001
clusters = [('PSAV001.0321.00001.C001_01018', 'T4P_pilD', 926), ('PSAV001.0321.00001.C001_01019', 'T4P_pilC', 927), ('PSAV001.0321.00001.C001_01020', 'T4P_pilB', 928), ('PSAV001.0321.00001.C001_01021', 'T4P_pilA', 929)], [('PSAV001.0321.00001.C001_05037', 'MSH_mshM', 4719), ('PSAV001.0321.00001.C001_05040', 'T4P_pilQ', 4722), ('PSAV001.0321.00001.C001_05041', 'T4P_pilP', 4723), ('PSAV001.0321.00001.C001_05042', 'T4P_pilO', 4724), ('PSAV001.0321.00001.C001_05043', 'T4P_pilN', 4725), ('PSAV001.0321.00001.C001_05044', 'T4P_pilM', 4726)]
occ = 1
wholeness = 0.556
loci nb = 2
score = 8.000

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [PSAV001.0321.00001.C001_T2SS_2])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 1 (MSH_mshM)

neutral genes:

============================================================
system id = PSAV001.0321.00001.C001_T4P_7
model = TFF-SF/T4P
replicon = PSAV001.0321.00001.C001
clusters = [('PSAV001.0321.00001.C001_01018', 'T4P_pilD', 926), ('PSAV001.0321.00001.C001_01019', 'T4P_pilC', 927), ('PSAV001.0321.00001.C001_01020', 'T4P_pilB', 928), ('PSAV001.0321.00001.C001_01021', 'T4P_pilA', 929)], [('PSAV001.0321.00001.C001_04959', 'T4P_pilT', 4643)]
occ = 1
wholeness = 0.278
loci nb = 1
score = 4.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 0 ()
	- T4P_pilQ: 0 ()
	- T4P_pilN: 0 ()
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [PSAV001.0321.00001.C001_T2SS_2])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = PSAV001.0321.00001.C001_T2SS_2
model = TFF-SF/T2SS
replicon = PSAV001.0321.00001.C001
clusters = [('PSAV001.0321.00001.C001_02322', 'T2SS_gspE', 2157), ('PSAV001.0321.00001.C001_02323', 'T2SS_gspF', 2158), ('PSAV001.0321.00001.C001_02324', 'T2SS_gspG', 2159), ('PSAV001.0321.00001.C001_02325', 'T2SS_gspH', 2160), ('PSAV001.0321.00001.C001_02326', 'T2SS_gspI', 2161), ('PSAV001.0321.00001.C001_02327', 'T2SS_gspJ', 2162), ('PSAV001.0321.00001.C001_02328', 'T2SS_gspK', 2163), ('PSAV001.0321.00001.C001_02329', 'T2SS_gspL', 2164), ('PSAV001.0321.00001.C001_02330', 'T2SS_gspM', 2165), ('PSAV001.0321.00001.C001_02332', 'T2SS_gspD', 2167)], [('PSAV001.0321.00001.C001_01018', 'T4P_pilD', 926)]
occ = 1
wholeness = 0.786
loci nb = 1
score = 7.560

mandatory genes:
	- T2SS_gspD: 1 (T2SS_gspD)
	- T2SS_gspE: 1 (T2SS_gspE)
	- T2SS_gspF: 1 (T2SS_gspF)
	- T2SS_gspG: 1 (T2SS_gspG)
	- T2SS_gspC: 0 ()
	- T2SS_gspO: 1 (T4P_pilD [PSAV001.0321.00001.C001_T4P_11, PSAV001.0321.00001.C001_T4P_12, PSAV001.0321.00001.C001_T4P_3, PSAV001.0321.00001.C001_T4P_5, PSAV001.0321.00001.C001_T4P_6, PSAV001.0321.00001.C001_T4P_7, PSAV001.0321.00001.C001_T4P_9])

accessory genes:
	- T2SS_gspM: 1 (T2SS_gspM)
	- T2SS_gspH: 1 (T2SS_gspH)
	- T2SS_gspI: 1 (T2SS_gspI)
	- T2SS_gspJ: 1 (T2SS_gspJ)
	- T2SS_gspK: 1 (T2SS_gspK)
	- T2SS_gspN: 0 ()
	- T2SS_gspL: 1 (T2SS_gspL)
	- Tad_tadD: 0 ()

neutral genes:

============================================================
system id = PSAV001.0321.00001.C001_T2SS_1
model = TFF-SF/T2SS
replicon = PSAV001.0321.00001.C001
clusters = [('PSAV001.0321.00001.C001_02322', 'T2SS_gspE', 2157), ('PSAV001.0321.00001.C001_02323', 'T2SS_gspF', 2158), ('PSAV001.0321.00001.C001_02324', 'T2SS_gspG', 2159), ('PSAV001.0321.00001.C001_02325', 'T2SS_gspH', 2160), ('PSAV001.0321.00001.C001_02326', 'T2SS_gspI', 2161), ('PSAV001.0321.00001.C001_02327', 'T2SS_gspJ', 2162), ('PSAV001.0321.00001.C001_02328', 'T2SS_gspK', 2163), ('PSAV001.0321.00001.C001_02329', 'T2SS_gspL', 2164), ('PSAV001.0321.00001.C001_02330', 'T2SS_gspM', 2165), ('PSAV001.0321.00001.C001_02332', 'T2SS_gspD', 2167)]
occ = 1
wholeness = 0.714
loci nb = 1
score = 7.000

mandatory genes:
	- T2SS_gspD: 1 (T2SS_gspD)
	- T2SS_gspE: 1 (T2SS_gspE)
	- T2SS_gspF: 1 (T2SS_gspF)
	- T2SS_gspG: 1 (T2SS_gspG)
	- T2SS_gspC: 0 ()
	- T2SS_gspO: 0 ()

accessory genes:
	- T2SS_gspM: 1 (T2SS_gspM)
	- T2SS_gspH: 1 (T2SS_gspH)
	- T2SS_gspI: 1 (T2SS_gspI)
	- T2SS_gspJ: 1 (T2SS_gspJ)
	- T2SS_gspK: 1 (T2SS_gspK)
	- T2SS_gspN: 0 ()
	- T2SS_gspL: 1 (T2SS_gspL)
	- Tad_tadD: 0 ()

neutral genes:

============================================================
system id = PSAV001.0321.00001.C001_Tad_14
model = TFF-SF/Tad
replicon = PSAV001.0321.00001.C001
clusters = [('PSAV001.0321.00001.C001_04742', 'Tad_tadE', 4431), ('PSAV001.0321.00001.C001_04743', 'Tad_tadV', 4432)], [('PSAV001.0321.00001.C001_04756', 'Tad_flp', 4445), ('PSAV001.0321.00001.C001_04757', 'Tad_rcpC', 4446), ('PSAV001.0321.00001.C001_04758', 'Tad_rcpA', 4447), ('PSAV001.0321.00001.C001_04759', 'Tad_tadZ', 4448), ('PSAV001.0321.00001.C001_04760', 'Tad_tadA', 4449), ('PSAV001.0321.00001.C001_04761', 'Tad_tadB', 4450), ('PSAV001.0321.00001.C001_04762', 'Tad_tadC', 4451), ('PSAV001.0321.00001.C001_04763', 'Tad_tadD', 4452)]
occ = 1
wholeness = 0.833
loci nb = 2
score = 8.500

mandatory genes:
	- Tad_rcpA: 1 (Tad_rcpA)
	- Tad_tadA: 1 (Tad_tadA)
	- Tad_tadB: 1 (Tad_tadB)
	- Tad_tadC: 1 (Tad_tadC)
	- Tad_tadV: 1 (Tad_tadV)
	- Tad_tadZ: 1 (Tad_tadZ)
	- Tad_flp: 1 (Tad_flp)

accessory genes:
	- Tad_tadE: 1 (Tad_tadE)
	- Tad_tadF: 0 ()
	- Tad_tadD: 1 (Tad_tadD)
	- Tad_rcpB: 0 ()
	- Tad_rcpC: 1 (Tad_rcpC)

neutral genes:

============================================================
system id = PSAV001.0321.00001.C001_Tad_13
model = TFF-SF/Tad
replicon = PSAV001.0321.00001.C001
clusters = [('PSAV001.0321.00001.C001_04756', 'Tad_flp', 4445), ('PSAV001.0321.00001.C001_04757', 'Tad_rcpC', 4446), ('PSAV001.0321.00001.C001_04758', 'Tad_rcpA', 4447), ('PSAV001.0321.00001.C001_04759', 'Tad_tadZ', 4448), ('PSAV001.0321.00001.C001_04760', 'Tad_tadA', 4449), ('PSAV001.0321.00001.C001_04761', 'Tad_tadB', 4450), ('PSAV001.0321.00001.C001_04762', 'Tad_tadC', 4451), ('PSAV001.0321.00001.C001_04763', 'Tad_tadD', 4452)]
occ = 1
wholeness = 0.667
loci nb = 1
score = 7.000

mandatory genes:
	- Tad_rcpA: 1 (Tad_rcpA)
	- Tad_tadA: 1 (Tad_tadA)
	- Tad_tadB: 1 (Tad_tadB)
	- Tad_tadC: 1 (Tad_tadC)
	- Tad_tadV: 0 ()
	- Tad_tadZ: 1 (Tad_tadZ)
	- Tad_flp: 1 (Tad_flp)

accessory genes:
	- Tad_tadE: 0 ()
	- Tad_tadF: 0 ()
	- Tad_tadD: 1 (Tad_tadD)
	- Tad_rcpB: 0 ()
	- Tad_rcpC: 1 (Tad_rcpC)

neutral genes:

============================================================
system id = PSAV001.0321.00001.C001_T4P_8
model = TFF-SF/T4P
replicon = PSAV001.0321.00001.C001
clusters = [('PSAV001.0321.00001.C001_05037', 'MSH_mshM', 4719), ('PSAV001.0321.00001.C001_05040', 'T4P_pilQ', 4722), ('PSAV001.0321.00001.C001_05041', 'T4P_pilP', 4723), ('PSAV001.0321.00001.C001_05042', 'T4P_pilO', 4724), ('PSAV001.0321.00001.C001_05043', 'T4P_pilN', 4725), ('PSAV001.0321.00001.C001_05044', 'T4P_pilM', 4726)], [('PSAV001.0321.00001.C001_04959', 'T4P_pilT', 4643)]
occ = 1
wholeness = 0.389
loci nb = 1
score = 5.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 1 (MSH_mshM)

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_473
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.778
loci nb = 4
score = 10.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_672
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.778
loci nb = 3
score = 10.050

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_770
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.778
loci nb = 4
score = 9.900

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_846
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.778
loci nb = 3
score = 9.750

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_439
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.722
loci nb = 3
score = 9.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_84
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 1
wholeness = 0.722
loci nb = 4
score = 9.500

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_750
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.722
loci nb = 3
score = 9.400

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_767
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.833
loci nb = 4
score = 9.400

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_247
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)]
occ = 1
wholeness = 0.722
loci nb = 3
score = 9.350

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_844
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.833
loci nb = 3
score = 9.250

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_330
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.722
loci nb = 4
score = 9.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_467
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.722
loci nb = 4
score = 9.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_512
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.778
loci nb = 4
score = 9.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_543
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.778
loci nb = 5
score = 9.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_635
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.722
loci nb = 3
score = 9.050

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_669
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.722
loci nb = 3
score = 9.050

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_691
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.778
loci nb = 4
score = 9.050

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_54
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 1
wholeness = 0.667
loci nb = 3
score = 9.000

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_747
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.778
loci nb = 3
score = 8.900

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_792
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.778
loci nb = 4
score = 8.900

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_311
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.667
loci nb = 3
score = 8.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_327
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.778
loci nb = 4
score = 8.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_433
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.667
loci nb = 3
score = 8.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_463
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.778
loci nb = 4
score = 8.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_508
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.722
loci nb = 4
score = 8.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_537
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.833
loci nb = 5
score = 8.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_633
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.778
loci nb = 3
score = 8.550

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_666
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.778
loci nb = 3
score = 8.550

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_688
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.833
loci nb = 4
score = 8.550

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_81
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 1
wholeness = 0.667
loci nb = 4
score = 8.500

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_121
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 1
wholeness = 0.722
loci nb = 4
score = 8.500

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_152
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 1
wholeness = 0.722
loci nb = 5
score = 8.500

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_789
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.833
loci nb = 4
score = 8.400

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_801
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.833
loci nb = 5
score = 8.400

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_245
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)]
occ = 1
wholeness = 0.667
loci nb = 3
score = 8.350

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_265
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)]
occ = 1
wholeness = 0.722
loci nb = 4
score = 8.350

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_853
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.833
loci nb = 4
score = 8.250

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_308
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.722
loci nb = 3
score = 8.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_351
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.722
loci nb = 4
score = 8.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_429
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.722
loci nb = 3
score = 8.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_502
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.778
loci nb = 4
score = 8.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_507
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.722
loci nb = 4
score = 8.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_546
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.778
loci nb = 5
score = 8.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_547
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.778
loci nb = 5
score = 8.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_576
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.778
loci nb = 5
score = 8.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_692
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.778
loci nb = 4
score = 8.050

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_51
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 1
wholeness = 0.611
loci nb = 3
score = 8.000

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_77
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 1
wholeness = 0.722
loci nb = 4
score = 8.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_118
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 1
wholeness = 0.667
loci nb = 4
score = 8.000

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_146
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 2
wholeness = 0.778
loci nb = 5
score = 8.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_733
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.667
loci nb = 3
score = 7.900

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_786
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.778
loci nb = 4
score = 7.900

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_806
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.778
loci nb = 5
score = 7.900

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_807
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.778
loci nb = 5
score = 7.900

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_242
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)]
occ = 1
wholeness = 0.722
loci nb = 3
score = 7.850

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_262
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)]
occ = 2
wholeness = 0.778
loci nb = 4
score = 7.850

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_835
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.667
loci nb = 2
score = 7.750

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_855
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.778
loci nb = 4
score = 7.750

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_348
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.778
loci nb = 4
score = 7.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_360
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 2
wholeness = 0.778
loci nb = 5
score = 7.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_412
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.500
loci nb = 3
score = 7.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_501
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.778
loci nb = 4
score = 7.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_511
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.722
loci nb = 4
score = 7.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_531
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.778
loci nb = 5
score = 7.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_572
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.833
loci nb = 5
score = 7.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_589
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.833
loci nb = 6
score = 7.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_642
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 2
wholeness = 0.778
loci nb = 4
score = 7.550

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_653
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.500
loci nb = 2
score = 7.550

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_685
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.778
loci nb = 4
score = 7.550

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_700
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.833
loci nb = 5
score = 7.550

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_47
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 1
wholeness = 0.667
loci nb = 3
score = 7.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_112
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 2
wholeness = 0.722
loci nb = 4
score = 7.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_117
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 1
wholeness = 0.667
loci nb = 4
score = 7.500

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_154
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 1
wholeness = 0.722
loci nb = 5
score = 7.500

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_155
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 1
wholeness = 0.722
loci nb = 5
score = 7.500

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_184
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 2
wholeness = 0.722
loci nb = 5
score = 7.500

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_718
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.611
loci nb = 2
score = 7.400

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_730
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.500
loci nb = 3
score = 7.400

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_791
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.722
loci nb = 4
score = 7.400

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_803
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.833
loci nb = 5
score = 7.400

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_804
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.833
loci nb = 5
score = 7.400

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_816
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.833
loci nb = 5
score = 7.400

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_266
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)]
occ = 1
wholeness = 0.722
loci nb = 4
score = 7.350

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_833
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.500
loci nb = 2
score = 7.250

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_854
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.833
loci nb = 4
score = 7.250

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_298
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.611
loci nb = 3
score = 7.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_345
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 2
wholeness = 0.722
loci nb = 4
score = 7.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_365
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.722
loci nb = 5
score = 7.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_366
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.722
loci nb = 5
score = 7.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_396
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.444
loci nb = 2
score = 7.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_413
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.611
loci nb = 3
score = 7.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_496
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.722
loci nb = 4
score = 7.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_540
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.722
loci nb = 5
score = 7.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_542
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.722
loci nb = 5
score = 7.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_568
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.778
loci nb = 5
score = 7.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_577
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.778
loci nb = 5
score = 7.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_596
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.778
loci nb = 6
score = 7.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_597
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.778
loci nb = 6
score = 7.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_626
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.611
loci nb = 2
score = 7.050

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_644
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.722
loci nb = 4
score = 7.050

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_654
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.611
loci nb = 2
score = 7.050

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_690
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.722
loci nb = 4
score = 7.050

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_702
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.778
loci nb = 5
score = 7.050

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_33
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 1
wholeness = 0.444
loci nb = 3
score = 7.000

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_111
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 1
wholeness = 0.722
loci nb = 4
score = 7.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_120
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 1
wholeness = 0.667
loci nb = 4
score = 7.000

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_140
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 2
wholeness = 0.722
loci nb = 5
score = 7.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_180
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 2
wholeness = 0.778
loci nb = 5
score = 7.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_197
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 2
wholeness = 0.778
loci nb = 6
score = 7.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_715
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.444
loci nb = 2
score = 6.900

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_729
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.556
loci nb = 3
score = 6.900

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_753
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.667
loci nb = 3
score = 6.900

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_788
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.778
loci nb = 4
score = 6.900

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_818
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.778
loci nb = 5
score = 6.900

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_232
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)]
occ = 1
wholeness = 0.444
loci nb = 2
score = 6.850

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_259
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)]
occ = 2
wholeness = 0.722
loci nb = 4
score = 6.850

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_274
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)]
occ = 2
wholeness = 0.778
loci nb = 5
score = 6.850

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_832
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.556
loci nb = 2
score = 6.750

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_287
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.556
loci nb = 2
score = 6.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_295
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.444
loci nb = 3
score = 6.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_350
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.667
loci nb = 4
score = 6.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_362
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.778
loci nb = 5
score = 6.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_363
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.778
loci nb = 5
score = 6.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_375
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 2
wholeness = 0.778
loci nb = 5
score = 6.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_397
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.556
loci nb = 2
score = 6.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_409
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.444
loci nb = 3
score = 6.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_437
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.500
loci nb = 3
score = 6.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_466
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.500
loci nb = 4
score = 6.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_505
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.667
loci nb = 4
score = 6.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_534
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.778
loci nb = 5
score = 6.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_536
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.778
loci nb = 5
score = 6.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_567
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.778
loci nb = 5
score = 6.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_575
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.722
loci nb = 5
score = 6.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_592
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.833
loci nb = 6
score = 6.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_593
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.833
loci nb = 6
score = 6.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_608
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.833
loci nb = 6
score = 6.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_624
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.444
loci nb = 2
score = 6.550

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_643
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.778
loci nb = 4
score = 6.550

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_651
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.444
loci nb = 2
score = 6.550

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_668
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.500
loci nb = 3
score = 6.550

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_687
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.778
loci nb = 4
score = 6.550

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_701
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.833
loci nb = 5
score = 6.550

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_21
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 1
wholeness = 0.389
loci nb = 2
score = 6.500

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_106
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 2
wholeness = 0.667
loci nb = 4
score = 6.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_149
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 1
wholeness = 0.667
loci nb = 5
score = 6.500

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_151
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 1
wholeness = 0.667
loci nb = 5
score = 6.500

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_176
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 2
wholeness = 0.722
loci nb = 5
score = 6.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_185
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 1
wholeness = 0.722
loci nb = 5
score = 6.500

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_204
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 2
wholeness = 0.722
loci nb = 6
score = 6.500

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_205
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 2
wholeness = 0.722
loci nb = 6
score = 6.500

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_714
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.500
loci nb = 2
score = 6.400

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_749
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.500
loci nb = 3
score = 6.400

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_817
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.833
loci nb = 5
score = 6.400

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 4 (T4P_pilO, T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 4 (T4P_pilN, T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_821
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.833
loci nb = 6
score = 6.400

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_822
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.833
loci nb = 6
score = 6.400

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_264
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)]
occ = 1
wholeness = 0.667
loci nb = 4
score = 6.350

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_276
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)]
occ = 2
wholeness = 0.722
loci nb = 5
score = 6.350

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_857
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.833
loci nb = 5
score = 6.250

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_284
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.389
loci nb = 2
score = 6.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_294
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.500
loci nb = 3
score = 6.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_314
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.611
loci nb = 3
score = 6.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_347
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.722
loci nb = 4
score = 6.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_377
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.722
loci nb = 5
score = 6.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_393
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.389
loci nb = 2
score = 6.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_408
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.500
loci nb = 3
score = 6.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_432
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.444
loci nb = 3
score = 6.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_438
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.611
loci nb = 3
score = 6.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_462
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.556
loci nb = 4
score = 6.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_499
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.722
loci nb = 4
score = 6.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_571
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.778
loci nb = 5
score = 6.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_574
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.722
loci nb = 5
score = 6.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_598
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.778
loci nb = 6
score = 6.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_610
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.778
loci nb = 6
score = 6.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_623
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.500
loci nb = 2
score = 6.050

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_650
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.500
loci nb = 2
score = 6.050

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_665
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.556
loci nb = 3
score = 6.050

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_32
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)]
occ = 1
wholeness = 0.389
loci nb = 3
score = 6.000

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_53
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 1
wholeness = 0.444
loci nb = 3
score = 6.000

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_80
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 1
wholeness = 0.444
loci nb = 4
score = 6.000

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_115
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 1
wholeness = 0.611
loci nb = 4
score = 6.000

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_143
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 1
wholeness = 0.722
loci nb = 5
score = 6.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_145
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 1
wholeness = 0.722
loci nb = 5
score = 6.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_175
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 2
wholeness = 0.722
loci nb = 5
score = 6.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_183
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 2
wholeness = 0.667
loci nb = 5
score = 6.000

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_200
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 2
wholeness = 0.778
loci nb = 6
score = 6.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_201
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 2
wholeness = 0.778
loci nb = 6
score = 6.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_216
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 2
wholeness = 0.778
loci nb = 6
score = 6.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_746
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.556
loci nb = 3
score = 5.900

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_764
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.556
loci nb = 4
score = 5.900

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_772
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.667
loci nb = 4
score = 5.900

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_773
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.667
loci nb = 4
score = 5.900

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_815
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.778
loci nb = 5
score = 5.900

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_824
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.778
loci nb = 6
score = 5.900

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_231
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)]
occ = 1
wholeness = 0.389
loci nb = 2
score = 5.850

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_244
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)]
occ = 1
wholeness = 0.444
loci nb = 3
score = 5.850

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_261
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)]
occ = 1
wholeness = 0.722
loci nb = 4
score = 5.850

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_275
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)]
occ = 2
wholeness = 0.778
loci nb = 5
score = 5.850

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_842
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.556
loci nb = 3
score = 5.750

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_847
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.667
loci nb = 3
score = 5.750

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_283
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.444
loci nb = 2
score = 5.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_310
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.444
loci nb = 3
score = 5.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_376
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.778
loci nb = 5
score = 5.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 4 (T4P_pilO, T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 4 (T4P_pilN, T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_380
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 2
wholeness = 0.778
loci nb = 6
score = 5.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_381
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 2
wholeness = 0.778
loci nb = 6
score = 5.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_392
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.444
loci nb = 2
score = 5.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_428
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.500
loci nb = 3
score = 5.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_431
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.444
loci nb = 3
score = 5.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_469
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.500
loci nb = 4
score = 5.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_471
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.500
loci nb = 4
score = 5.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_506
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.500
loci nb = 4
score = 5.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_570
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.778
loci nb = 5
score = 5.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 4 (T4P_pilO, T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 4 (T4P_pilN, T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_586
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.778
loci nb = 6
score = 5.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_588
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.778
loci nb = 6
score = 5.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_609
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.833
loci nb = 6
score = 5.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 4 (T4P_pilO, T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 4 (T4P_pilN, T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_614
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.833
loci nb = 7
score = 5.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_615
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.833
loci nb = 7
score = 5.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_646
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 2
wholeness = 0.778
loci nb = 5
score = 5.550

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_670
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.500
loci nb = 3
score = 5.550

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_699
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.778
loci nb = 5
score = 5.550

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_704
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.833
loci nb = 6
score = 5.550

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_20
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)]
occ = 1
wholeness = 0.333
loci nb = 2
score = 5.500

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_31
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)]
occ = 1
wholeness = 0.444
loci nb = 3
score = 5.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_50
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 1
wholeness = 0.389
loci nb = 3
score = 5.500

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_76
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 2
wholeness = 0.500
loci nb = 4
score = 5.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_109
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 1
wholeness = 0.667
loci nb = 4
score = 5.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_179
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 2
wholeness = 0.722
loci nb = 5
score = 5.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_182
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 1
wholeness = 0.667
loci nb = 5
score = 5.500

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_206
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 1
wholeness = 0.722
loci nb = 6
score = 5.500

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_218
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 2
wholeness = 0.722
loci nb = 6
score = 5.500

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_709
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.389
loci nb = 2
score = 5.400

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_744
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.500
loci nb = 3
score = 5.400

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_752
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.611
loci nb = 3
score = 5.400

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_768
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.500
loci nb = 4
score = 5.400

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_769
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.500
loci nb = 4
score = 5.400

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_823
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.833
loci nb = 6
score = 5.400

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 4 (T4P_pilO, T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 4 (T4P_pilN, T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_826
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.833
loci nb = 6
score = 5.400

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 4 (T4P_pilO, T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 4 (T4P_pilN, T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_230
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)]
occ = 1
wholeness = 0.444
loci nb = 2
score = 5.350

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_241
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)]
occ = 2
wholeness = 0.500
loci nb = 3
score = 5.350

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_828
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.389
loci nb = 1
score = 5.250

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_845
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.500
loci nb = 3
score = 5.250

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_307
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.500
loci nb = 3
score = 5.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_324
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 2
wholeness = 0.500
loci nb = 4
score = 5.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_332
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.611
loci nb = 4
score = 5.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_333
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.611
loci nb = 4
score = 5.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_374
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 2
wholeness = 0.722
loci nb = 5
score = 5.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_383
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.722
loci nb = 6
score = 5.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_427
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.500
loci nb = 3
score = 5.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_435
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.444
loci nb = 3
score = 5.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_459
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.500
loci nb = 4
score = 5.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_470
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.611
loci nb = 4
score = 5.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_472
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.611
loci nb = 4
score = 5.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_500
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.556
loci nb = 4
score = 5.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_530
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.556
loci nb = 5
score = 5.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_565
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.722
loci nb = 5
score = 5.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_595
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.722
loci nb = 6
score = 5.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_607
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.778
loci nb = 6
score = 5.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_617
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.778
loci nb = 7
score = 5.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_631
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 2
wholeness = 0.500
loci nb = 3
score = 5.050

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_636
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.611
loci nb = 3
score = 5.050

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_663
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.500
loci nb = 3
score = 5.050

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_671
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.611
loci nb = 3
score = 5.050

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_684
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.556
loci nb = 4
score = 5.050

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_19
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)]
occ = 1
wholeness = 0.389
loci nb = 2
score = 5.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_46
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 2
wholeness = 0.444
loci nb = 3
score = 5.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_49
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)]
occ = 1
wholeness = 0.389
loci nb = 3
score = 5.000

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_82
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 1
wholeness = 0.444
loci nb = 4
score = 5.000

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_83
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 1
wholeness = 0.444
loci nb = 4
score = 5.000

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_116
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 2
wholeness = 0.444
loci nb = 4
score = 5.000

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_178
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 1
wholeness = 0.722
loci nb = 5
score = 5.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 4 (T4P_pilO, T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 4 (T4P_pilN, T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_194
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 2
wholeness = 0.722
loci nb = 6
score = 5.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_196
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 2
wholeness = 0.722
loci nb = 6
score = 5.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_217
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 2
wholeness = 0.778
loci nb = 6
score = 5.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 4 (T4P_pilO, T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 4 (T4P_pilN, T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_222
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 2
wholeness = 0.778
loci nb = 7
score = 5.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_223
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 2
wholeness = 0.778
loci nb = 7
score = 5.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_705
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.333
loci nb = 1
score = 4.900

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_748
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.444
loci nb = 3
score = 4.900

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_765
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.556
loci nb = 4
score = 4.900

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_766
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.556
loci nb = 4
score = 4.900

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_785
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.556
loci nb = 4
score = 4.900

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_793
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.667
loci nb = 4
score = 4.900

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_246
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)]
occ = 1
wholeness = 0.444
loci nb = 3
score = 4.850

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_273
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)]
occ = 2
wholeness = 0.722
loci nb = 5
score = 4.850

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_278
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)]
occ = 2
wholeness = 0.778
loci nb = 6
score = 4.850

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_843
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.556
loci nb = 3
score = 4.750

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_281
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.333
loci nb = 2
score = 4.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_305
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 2
wholeness = 0.444
loci nb = 3
score = 4.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_313
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.556
loci nb = 3
score = 4.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_328
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.444
loci nb = 4
score = 4.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_329
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.444
loci nb = 4
score = 4.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_382
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.778
loci nb = 6
score = 4.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 4 (T4P_pilO, T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 4 (T4P_pilN, T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_385
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 2
wholeness = 0.778
loci nb = 6
score = 4.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 4 (T4P_pilO, T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 4 (T4P_pilN, T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_389
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.333
loci nb = 2
score = 4.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_425
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.444
loci nb = 3
score = 4.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_436
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.556
loci nb = 3
score = 4.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_464
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.444
loci nb = 4
score = 4.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_465
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.444
loci nb = 4
score = 4.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_495
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.500
loci nb = 4
score = 4.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_509
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.500
loci nb = 4
score = 4.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_539
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.500
loci nb = 5
score = 4.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_541
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.500
loci nb = 5
score = 4.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_591
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.778
loci nb = 6
score = 4.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 4 (T4P_pilO, T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 4 (T4P_pilN, T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_606
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.778
loci nb = 6
score = 4.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 4 (T4P_pilO, T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 4 (T4P_pilN, T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_616
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.833
loci nb = 7
score = 4.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 4 (T4P_pilO, T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 4 (T4P_pilN, T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_619
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.833
loci nb = 7
score = 4.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 4 (T4P_pilO, T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 4 (T4P_pilN, T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_621
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.333
loci nb = 1
score = 4.550

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_634
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.444
loci nb = 3
score = 4.550

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_647
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.333
loci nb = 1
score = 4.550

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_667
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.444
loci nb = 3
score = 4.550

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_689
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.500
loci nb = 4
score = 4.550

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_45
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)]
occ = 1
wholeness = 0.444
loci nb = 3
score = 4.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_52
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 1
wholeness = 0.389
loci nb = 3
score = 4.500

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_73
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)]
occ = 2
wholeness = 0.444
loci nb = 4
score = 4.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_110
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 2
wholeness = 0.500
loci nb = 4
score = 4.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_139
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 2
wholeness = 0.500
loci nb = 5
score = 4.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_173
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 2
wholeness = 0.667
loci nb = 5
score = 4.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_203
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 1
wholeness = 0.667
loci nb = 6
score = 4.500

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_215
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 2
wholeness = 0.722
loci nb = 6
score = 4.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_225
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 2
wholeness = 0.722
loci nb = 7
score = 4.500

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_717
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.389
loci nb = 2
score = 4.400

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_745
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.500
loci nb = 3
score = 4.400

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_790
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.500
loci nb = 4
score = 4.400

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_827
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.833
loci nb = 7
score = 4.400

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 4 (T4P_pilO, T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 4 (T4P_pilN, T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_239
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)]
occ = 2
wholeness = 0.444
loci nb = 3
score = 4.350

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_258
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)]
occ = 2
wholeness = 0.500
loci nb = 4
score = 4.350

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_279
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.278
loci nb = 1
score = 4.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_309
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.389
loci nb = 3
score = 4.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_325
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.500
loci nb = 4
score = 4.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_326
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.500
loci nb = 4
score = 4.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_344
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 2
wholeness = 0.500
loci nb = 4
score = 4.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_352
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.611
loci nb = 4
score = 4.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_387
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.278
loci nb = 1
score = 4.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_430
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.389
loci nb = 3
score = 4.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_460
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.500
loci nb = 4
score = 4.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_461
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.500
loci nb = 4
score = 4.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_494
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.500
loci nb = 4
score = 4.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_504
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.444
loci nb = 4
score = 4.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_510
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.611
loci nb = 4
score = 4.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_533
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.556
loci nb = 5
score = 4.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_535
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.556
loci nb = 5
score = 4.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_566
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.556
loci nb = 5
score = 4.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_632
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.500
loci nb = 3
score = 4.050

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_664
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.500
loci nb = 3
score = 4.050

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_686
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.556
loci nb = 4
score = 4.050

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_43
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)]
occ = 2
wholeness = 0.389
loci nb = 3
score = 4.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_78
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)]
occ = 1
wholeness = 0.389
loci nb = 4
score = 4.000

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_79
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)]
occ = 1
wholeness = 0.389
loci nb = 4
score = 4.000

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_105
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 2
wholeness = 0.444
loci nb = 4
score = 4.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_119
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 1
wholeness = 0.444
loci nb = 4
score = 4.000

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_148
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 2
wholeness = 0.444
loci nb = 5
score = 4.000

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_150
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 2
wholeness = 0.444
loci nb = 5
score = 4.000

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_199
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 1
wholeness = 0.722
loci nb = 6
score = 4.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 4 (T4P_pilO, T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 4 (T4P_pilN, T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_214
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 2
wholeness = 0.722
loci nb = 6
score = 4.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 4 (T4P_pilO, T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 4 (T4P_pilN, T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_224
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 2
wholeness = 0.778
loci nb = 7
score = 4.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 4 (T4P_pilO, T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 4 (T4P_pilN, T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_227
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 2
wholeness = 0.778
loci nb = 7
score = 4.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 4 (T4P_pilO, T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 4 (T4P_pilN, T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_787
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.556
loci nb = 4
score = 3.900

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 4 (T4P_pilO, T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 4 (T4P_pilN, T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_799
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.556
loci nb = 5
score = 3.900

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_800
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.556
loci nb = 5
score = 3.900

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_808
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.667
loci nb = 5
score = 3.900

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_243
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)]
occ = 1
wholeness = 0.389
loci nb = 3
score = 3.850

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_263
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)]
occ = 2
wholeness = 0.444
loci nb = 4
score = 3.850

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_852
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.556
loci nb = 4
score = 3.750

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_286
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.333
loci nb = 2
score = 3.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_306
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.444
loci nb = 3
score = 3.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_349
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.444
loci nb = 4
score = 3.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_386
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 2
wholeness = 0.778
loci nb = 7
score = 3.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 4 (T4P_pilO, T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 4 (T4P_pilN, T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_395
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.333
loci nb = 2
score = 3.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_426
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.444
loci nb = 3
score = 3.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_498
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.500
loci nb = 4
score = 3.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_503
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.444
loci nb = 4
score = 3.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_544
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.500
loci nb = 5
score = 3.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_573
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.500
loci nb = 5
score = 3.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_613
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.778
loci nb = 7
score = 3.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 4 (T4P_pilO, T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 4 (T4P_pilN, T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_620
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.833
loci nb = 8
score = 3.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 4 (T4P_pilO, T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 4 (T4P_pilN, T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_48
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)]
occ = 1
wholeness = 0.333
loci nb = 3
score = 3.500

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_74
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)]
occ = 1
wholeness = 0.444
loci nb = 4
score = 3.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_75
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)]
occ = 1
wholeness = 0.444
loci nb = 4
score = 3.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_104
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)]
occ = 2
wholeness = 0.444
loci nb = 4
score = 3.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_114
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 2
wholeness = 0.389
loci nb = 4
score = 3.500

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_142
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 2
wholeness = 0.500
loci nb = 5
score = 3.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_144
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 2
wholeness = 0.500
loci nb = 5
score = 3.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_174
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 2
wholeness = 0.500
loci nb = 5
score = 3.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_731
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.389
loci nb = 3
score = 3.400

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_732
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.389
loci nb = 3
score = 3.400

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_784
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.500
loci nb = 4
score = 3.400

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_805
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.500
loci nb = 5
score = 3.400

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_240
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)]
occ = 1
wholeness = 0.444
loci nb = 3
score = 3.350

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_260
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)]
occ = 2
wholeness = 0.500
loci nb = 4
score = 3.350

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_834
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.389
loci nb = 2
score = 3.250

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_346
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.500
loci nb = 4
score = 3.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 4 (T4P_pilO, T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 4 (T4P_pilN, T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_358
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 2
wholeness = 0.500
loci nb = 5
score = 3.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_359
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 2
wholeness = 0.500
loci nb = 5
score = 3.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_367
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.611
loci nb = 5
score = 3.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_497
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.500
loci nb = 4
score = 3.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 4 (T4P_pilO, T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 4 (T4P_pilN, T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_528
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.500
loci nb = 5
score = 3.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_529
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.500
loci nb = 5
score = 3.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_545
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.611
loci nb = 5
score = 3.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_569
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.556
loci nb = 5
score = 3.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 4 (T4P_pilO, T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 4 (T4P_pilN, T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_585
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.556
loci nb = 6
score = 3.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_587
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.556
loci nb = 6
score = 3.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_641
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 2
wholeness = 0.500
loci nb = 4
score = 3.050

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_683
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.500
loci nb = 4
score = 3.050

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_698
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.556
loci nb = 5
score = 3.050

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_44
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)]
occ = 1
wholeness = 0.389
loci nb = 3
score = 3.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_108
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 2
wholeness = 0.444
loci nb = 4
score = 3.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_113
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)]
occ = 1
wholeness = 0.389
loci nb = 4
score = 3.000

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_153
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 1
wholeness = 0.444
loci nb = 5
score = 3.000

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_181
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 2
wholeness = 0.444
loci nb = 5
score = 3.000

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_221
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 2
wholeness = 0.722
loci nb = 7
score = 3.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 4 (T4P_pilO, T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 4 (T4P_pilN, T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_228
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 2
wholeness = 0.778
loci nb = 8
score = 3.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 4 (T4P_pilO, T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 4 (T4P_pilN, T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_716
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.333
loci nb = 2
score = 2.900

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_802
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.556
loci nb = 5
score = 2.900

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 4 (T4P_pilO, T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 4 (T4P_pilN, T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_814
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.556
loci nb = 5
score = 2.900

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 4 (T4P_pilO, T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 4 (T4P_pilN, T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_296
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.333
loci nb = 3
score = 2.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_297
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.333
loci nb = 3
score = 2.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_343
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 2
wholeness = 0.444
loci nb = 4
score = 2.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_364
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.444
loci nb = 5
score = 2.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_410
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.333
loci nb = 3
score = 2.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_411
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.333
loci nb = 3
score = 2.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_493
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.444
loci nb = 4
score = 2.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_538
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.444
loci nb = 5
score = 2.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_564
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.500
loci nb = 5
score = 2.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_594
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.500
loci nb = 6
score = 2.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_625
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.333
loci nb = 2
score = 2.550

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_652
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.333
loci nb = 2
score = 2.550

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_107
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)]
occ = 1
wholeness = 0.444
loci nb = 4
score = 2.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 4 (T4P_pilO, T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 4 (T4P_pilN, T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_137
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)]
occ = 2
wholeness = 0.444
loci nb = 5
score = 2.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_138
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)]
occ = 2
wholeness = 0.444
loci nb = 5
score = 2.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_177
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 2
wholeness = 0.500
loci nb = 5
score = 2.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 4 (T4P_pilO, T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 4 (T4P_pilN, T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_193
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 2
wholeness = 0.500
loci nb = 6
score = 2.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_195
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 2
wholeness = 0.500
loci nb = 6
score = 2.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_751
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.389
loci nb = 3
score = 2.400

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_257
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)]
occ = 2
wholeness = 0.444
loci nb = 4
score = 2.350

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_272
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)]
occ = 2
wholeness = 0.500
loci nb = 5
score = 2.350

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_285
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.278
loci nb = 2
score = 2.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_361
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.500
loci nb = 5
score = 2.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 4 (T4P_pilO, T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 4 (T4P_pilN, T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_373
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 2
wholeness = 0.500
loci nb = 5
score = 2.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 4 (T4P_pilO, T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 4 (T4P_pilN, T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_394
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.278
loci nb = 2
score = 2.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_532
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.500
loci nb = 5
score = 2.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 4 (T4P_pilO, T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 4 (T4P_pilN, T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_563
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.500
loci nb = 5
score = 2.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 4 (T4P_pilO, T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 4 (T4P_pilN, T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_590
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.556
loci nb = 6
score = 2.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 4 (T4P_pilO, T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 4 (T4P_pilN, T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_605
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.556
loci nb = 6
score = 2.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 4 (T4P_pilO, T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 4 (T4P_pilN, T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_103
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)]
occ = 2
wholeness = 0.389
loci nb = 4
score = 2.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_147
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)]
occ = 1
wholeness = 0.389
loci nb = 5
score = 2.000

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_172
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 2
wholeness = 0.444
loci nb = 5
score = 2.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_202
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 2
wholeness = 0.444
loci nb = 6
score = 2.000

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_820
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.556
loci nb = 6
score = 1.900

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 4 (T4P_pilO, T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 4 (T4P_pilN, T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_312
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.333
loci nb = 3
score = 1.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_434
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.333
loci nb = 3
score = 1.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_141
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)]
occ = 1
wholeness = 0.444
loci nb = 5
score = 1.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 4 (T4P_pilO, T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 4 (T4P_pilN, T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_171
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)]
occ = 2
wholeness = 0.444
loci nb = 5
score = 1.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 4 (T4P_pilO, T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 4 (T4P_pilN, T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_198
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 2
wholeness = 0.500
loci nb = 6
score = 1.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 4 (T4P_pilO, T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 4 (T4P_pilN, T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_213
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 2
wholeness = 0.500
loci nb = 6
score = 1.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 4 (T4P_pilO, T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 4 (T4P_pilN, T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_771
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.389
loci nb = 4
score = 1.400

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_379
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 2
wholeness = 0.500
loci nb = 6
score = 1.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 4 (T4P_pilO, T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 4 (T4P_pilN, T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_584
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.500
loci nb = 6
score = 1.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 4 (T4P_pilO, T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 4 (T4P_pilN, T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_612
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.556
loci nb = 7
score = 1.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 4 (T4P_pilO, T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 4 (T4P_pilN, T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_331
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.333
loci nb = 4
score = 0.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_468
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.333
loci nb = 4
score = 0.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_192
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)]
occ = 2
wholeness = 0.444
loci nb = 6
score = 0.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 4 (T4P_pilO, T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 4 (T4P_pilN, T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_220
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00207', 'T4P_pilM', 5444), ('THHY002.0321.00001.C001_00208', 'T4P_pilN', 5445), ('THHY002.0321.00001.C001_00209', 'T4P_pilO', 5446), ('THHY002.0321.00001.C001_00211', 'T4P_pilQ', 5448)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 2
wholeness = 0.500
loci nb = 7
score = 0.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 4 (T4P_pilO, T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 2 (T4P_pilQ, T4P_pilQ)
	- T4P_pilN: 4 (T4P_pilN, T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 2 (T4P_pilM, T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_Tad_858
model = TFF-SF/Tad
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00711', 'Tad_flp', 5931), ('THHY002.0321.00001.C001_00712', 'Tad_tadV', 5932), ('THHY002.0321.00001.C001_00716', 'Tad_tadE', 5936), ('THHY002.0321.00001.C001_00718', 'Tad_rcpC', 5938), ('THHY002.0321.00001.C001_00719', 'Tad_rcpA', 5939), ('THHY002.0321.00001.C001_00720', 'Tad_tadA', 5940), ('THHY002.0321.00001.C001_00721', 'Tad_tadB', 5941), ('THHY002.0321.00001.C001_00722', 'Tad_tadC', 5942), ('THHY002.0321.00001.C001_00726', 'Tad_tadD', 5946)]
occ = 1
wholeness = 0.750
loci nb = 1
score = 7.500

mandatory genes:
	- Tad_rcpA: 1 (Tad_rcpA)
	- Tad_tadA: 1 (Tad_tadA)
	- Tad_tadB: 1 (Tad_tadB)
	- Tad_tadC: 1 (Tad_tadC)
	- Tad_tadV: 1 (Tad_tadV)
	- Tad_tadZ: 0 ()
	- Tad_flp: 1 (Tad_flp)

accessory genes:
	- Tad_tadE: 1 (Tad_tadE)
	- Tad_tadF: 0 ()
	- Tad_tadD: 1 (Tad_tadD)
	- Tad_rcpB: 0 ()
	- Tad_rcpC: 1 (Tad_rcpC)

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_737
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.778
loci nb = 3
score = 10.400

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_838
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.778
loci nb = 2
score = 10.250

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_722
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.722
loci nb = 2
score = 9.900

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_778
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.833
loci nb = 4
score = 9.900

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_850
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.833
loci nb = 3
score = 9.750

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_302
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.722
loci nb = 3
score = 9.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_418
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.722
loci nb = 3
score = 9.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_483
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.778
loci nb = 4
score = 9.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_629
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.722
loci nb = 2
score = 9.550

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_658
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.722
loci nb = 2
score = 9.550

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_678
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.778
loci nb = 3
score = 9.550

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_758
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.778
loci nb = 3
score = 9.400

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_759
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.778
loci nb = 3
score = 9.400

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_776
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.778
loci nb = 4
score = 9.400

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_849
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.778
loci nb = 3
score = 9.250

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_291
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.667
loci nb = 2
score = 9.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_338
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.778
loci nb = 4
score = 9.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_402
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.667
loci nb = 2
score = 9.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_449
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.722
loci nb = 3
score = 9.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_480
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.778
loci nb = 4
score = 9.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_556
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.833
loci nb = 5
score = 9.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_639
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.778
loci nb = 3
score = 9.050

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_677
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.778
loci nb = 3
score = 9.050

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_696
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.833
loci nb = 4
score = 9.050

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_38
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 1
wholeness = 0.667
loci nb = 3
score = 9.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_94
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 1
wholeness = 0.722
loci nb = 4
score = 9.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_756
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.722
loci nb = 3
score = 8.900

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_797
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.833
loci nb = 4
score = 8.900

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_810
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.833
loci nb = 5
score = 8.900

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_236
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)]
occ = 1
wholeness = 0.667
loci nb = 2
score = 8.850

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_253
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)]
occ = 1
wholeness = 0.722
loci nb = 3
score = 8.850

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_856
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.833
loci nb = 4
score = 8.750

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_319
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.722
loci nb = 3
score = 8.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_320
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.722
loci nb = 3
score = 8.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_336
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.722
loci nb = 4
score = 8.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_446
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.722
loci nb = 3
score = 8.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_448
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.722
loci nb = 3
score = 8.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_477
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.722
loci nb = 4
score = 8.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_521
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.778
loci nb = 4
score = 8.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_522
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.778
loci nb = 4
score = 8.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_553
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.778
loci nb = 5
score = 8.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_638
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.722
loci nb = 3
score = 8.550

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_675
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.722
loci nb = 3
score = 8.550

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_695
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.778
loci nb = 4
score = 8.550

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_26
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 1
wholeness = 0.611
loci nb = 2
score = 8.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_64
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 1
wholeness = 0.667
loci nb = 3
score = 8.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_91
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 1
wholeness = 0.722
loci nb = 4
score = 8.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_164
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 2
wholeness = 0.778
loci nb = 5
score = 8.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_779
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.778
loci nb = 4
score = 8.400

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_795
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.778
loci nb = 4
score = 8.400

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_796
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.778
loci nb = 4
score = 8.400

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_252
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)]
occ = 1
wholeness = 0.722
loci nb = 3
score = 8.350

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_270
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)]
occ = 2
wholeness = 0.778
loci nb = 4
score = 8.350

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_317
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.667
loci nb = 3
score = 8.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_356
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.778
loci nb = 4
score = 8.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_369
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 2
wholeness = 0.778
loci nb = 5
score = 8.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_443
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.667
loci nb = 3
score = 8.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_518
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.722
loci nb = 4
score = 8.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_520
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.778
loci nb = 4
score = 8.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_550
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.778
loci nb = 5
score = 8.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_582
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.833
loci nb = 5
score = 8.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_601
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.833
loci nb = 6
score = 8.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_645
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 2
wholeness = 0.778
loci nb = 4
score = 8.050

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_694
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.778
loci nb = 4
score = 8.050

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_703
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.833
loci nb = 5
score = 8.050

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_61
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 1
wholeness = 0.667
loci nb = 3
score = 8.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_63
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 1
wholeness = 0.667
loci nb = 3
score = 8.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_88
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 1
wholeness = 0.667
loci nb = 4
score = 8.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_130
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 2
wholeness = 0.722
loci nb = 4
score = 8.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_131
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 2
wholeness = 0.722
loci nb = 4
score = 8.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_161
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 1
wholeness = 0.722
loci nb = 5
score = 8.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_710
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.500
loci nb = 2
score = 7.900

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_812
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.833
loci nb = 5
score = 7.900

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_819
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.833
loci nb = 5
score = 7.900

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_250
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)]
occ = 1
wholeness = 0.667
loci nb = 3
score = 7.850

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_269
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)]
occ = 1
wholeness = 0.722
loci nb = 4
score = 7.850

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_829
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.500
loci nb = 1
score = 7.750

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_339
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.722
loci nb = 4
score = 7.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_354
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 2
wholeness = 0.722
loci nb = 4
score = 7.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_355
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 2
wholeness = 0.722
loci nb = 4
score = 7.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_482
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.722
loci nb = 4
score = 7.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_515
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.722
loci nb = 4
score = 7.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_517
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.722
loci nb = 4
score = 7.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_557
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.778
loci nb = 5
score = 7.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_580
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.778
loci nb = 5
score = 7.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_581
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.778
loci nb = 5
score = 7.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_58
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 1
wholeness = 0.611
loci nb = 3
score = 7.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_127
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 1
wholeness = 0.667
loci nb = 4
score = 7.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_129
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 1
wholeness = 0.722
loci nb = 4
score = 7.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_158
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 2
wholeness = 0.722
loci nb = 5
score = 7.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_190
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 2
wholeness = 0.778
loci nb = 5
score = 7.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_209
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 2
wholeness = 0.778
loci nb = 6
score = 7.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_706
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.444
loci nb = 1
score = 7.400

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_735
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.556
loci nb = 3
score = 7.400

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_811
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.778
loci nb = 5
score = 7.400

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_268
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)]
occ = 2
wholeness = 0.722
loci nb = 4
score = 7.350

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_277
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)]
occ = 2
wholeness = 0.778
loci nb = 5
score = 7.350

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_837
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.556
loci nb = 2
score = 7.250

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_282
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.444
loci nb = 2
score = 7.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_371
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.778
loci nb = 5
score = 7.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_378
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 2
wholeness = 0.778
loci nb = 5
score = 7.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_390
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.444
loci nb = 2
score = 7.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_417
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.500
loci nb = 3
score = 7.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_555
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.778
loci nb = 5
score = 7.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_579
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.778
loci nb = 5
score = 7.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_603
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.833
loci nb = 6
score = 7.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_611
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.833
loci nb = 6
score = 7.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_622
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.444
loci nb = 1
score = 7.050

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_648
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.444
loci nb = 1
score = 7.050

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_657
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.500
loci nb = 2
score = 7.050

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_93
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 1
wholeness = 0.667
loci nb = 4
score = 7.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_124
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 2
wholeness = 0.667
loci nb = 4
score = 7.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_126
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 2
wholeness = 0.667
loci nb = 4
score = 7.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_165
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 2
wholeness = 0.722
loci nb = 5
score = 7.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_188
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 2
wholeness = 0.722
loci nb = 5
score = 7.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_189
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 2
wholeness = 0.722
loci nb = 5
score = 7.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_720
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.500
loci nb = 2
score = 6.900

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_721
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.500
loci nb = 2
score = 6.900

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_734
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.500
loci nb = 3
score = 6.900

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_825
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.833
loci nb = 6
score = 6.900

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_836
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.500
loci nb = 2
score = 6.750

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_280
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.389
loci nb = 1
score = 6.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_300
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.500
loci nb = 3
score = 6.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_370
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 2
wholeness = 0.722
loci nb = 5
score = 6.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_388
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.389
loci nb = 1
score = 6.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_401
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.444
loci nb = 2
score = 6.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_415
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.500
loci nb = 3
score = 6.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_479
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.556
loci nb = 4
score = 6.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_552
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.722
loci nb = 5
score = 6.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_602
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.778
loci nb = 6
score = 6.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_628
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.500
loci nb = 2
score = 6.550

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_656
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.500
loci nb = 2
score = 6.550

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_676
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.556
loci nb = 3
score = 6.550

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_18
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)]
occ = 1
wholeness = 0.389
loci nb = 2
score = 6.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_37
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 1
wholeness = 0.444
loci nb = 3
score = 6.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_163
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 1
wholeness = 0.722
loci nb = 5
score = 6.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_187
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 2
wholeness = 0.722
loci nb = 5
score = 6.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_211
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 2
wholeness = 0.778
loci nb = 6
score = 6.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_219
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 2
wholeness = 0.778
loci nb = 6
score = 6.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_719
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.444
loci nb = 2
score = 6.400

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_757
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.556
loci nb = 3
score = 6.400

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_774
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.556
loci nb = 4
score = 6.400

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_229
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)]
occ = 1
wholeness = 0.389
loci nb = 1
score = 6.350

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_235
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)]
occ = 1
wholeness = 0.444
loci nb = 2
score = 6.350

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_848
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.556
loci nb = 3
score = 6.250

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_289
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.444
loci nb = 2
score = 6.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_290
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.444
loci nb = 2
score = 6.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_299
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.444
loci nb = 3
score = 6.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_384
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 2
wholeness = 0.778
loci nb = 6
score = 6.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_399
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.444
loci nb = 2
score = 6.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_400
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.444
loci nb = 2
score = 6.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_414
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.444
loci nb = 3
score = 6.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_445
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.500
loci nb = 3
score = 6.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_447
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.500
loci nb = 3
score = 6.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_476
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.500
loci nb = 4
score = 6.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_600
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.778
loci nb = 6
score = 6.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_618
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.833
loci nb = 7
score = 6.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_627
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.444
loci nb = 2
score = 6.050

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_655
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.444
loci nb = 2
score = 6.050

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_674
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.500
loci nb = 3
score = 6.050

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_17
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)]
occ = 1
wholeness = 0.333
loci nb = 1
score = 6.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_25
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 1
wholeness = 0.389
loci nb = 2
score = 6.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_35
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)]
occ = 1
wholeness = 0.444
loci nb = 3
score = 6.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_90
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 2
wholeness = 0.500
loci nb = 4
score = 6.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_160
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 2
wholeness = 0.667
loci nb = 5
score = 6.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_210
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 2
wholeness = 0.722
loci nb = 6
score = 6.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_736
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.500
loci nb = 3
score = 5.900

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_754
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.500
loci nb = 3
score = 5.900

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_755
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.500
loci nb = 3
score = 5.900

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_234
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)]
occ = 1
wholeness = 0.444
loci nb = 2
score = 5.850

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_251
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)]
occ = 2
wholeness = 0.500
loci nb = 3
score = 5.850

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_288
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.389
loci nb = 2
score = 5.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_318
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.500
loci nb = 3
score = 5.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_334
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 2
wholeness = 0.500
loci nb = 4
score = 5.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_398
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.389
loci nb = 2
score = 5.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_442
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.444
loci nb = 3
score = 5.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_444
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.500
loci nb = 3
score = 5.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_474
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.500
loci nb = 4
score = 5.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_519
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.556
loci nb = 4
score = 5.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_549
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.556
loci nb = 5
score = 5.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_637
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 2
wholeness = 0.500
loci nb = 3
score = 5.550

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_673
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.500
loci nb = 3
score = 5.550

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_693
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.556
loci nb = 4
score = 5.550

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_23
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)]
occ = 1
wholeness = 0.389
loci nb = 2
score = 5.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_24
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)]
occ = 1
wholeness = 0.389
loci nb = 2
score = 5.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_34
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)]
occ = 1
wholeness = 0.389
loci nb = 3
score = 5.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_60
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 2
wholeness = 0.444
loci nb = 3
score = 5.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_62
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 2
wholeness = 0.444
loci nb = 3
score = 5.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_87
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 1
wholeness = 0.444
loci nb = 4
score = 5.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_208
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 2
wholeness = 0.722
loci nb = 6
score = 5.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_226
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 2
wholeness = 0.778
loci nb = 7
score = 5.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_777
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.556
loci nb = 4
score = 5.400

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_794
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.556
loci nb = 4
score = 5.400

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_233
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)]
occ = 1
wholeness = 0.389
loci nb = 2
score = 5.350

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_249
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)]
occ = 1
wholeness = 0.444
loci nb = 3
score = 5.350

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_301
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.444
loci nb = 3
score = 5.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_315
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 2
wholeness = 0.444
loci nb = 3
score = 5.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_316
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 2
wholeness = 0.444
loci nb = 3
score = 5.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_416
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.444
loci nb = 3
score = 5.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_440
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.444
loci nb = 3
score = 5.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_441
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.444
loci nb = 3
score = 5.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_481
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.500
loci nb = 4
score = 5.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_514
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.500
loci nb = 4
score = 5.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_516
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.500
loci nb = 4
score = 5.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_22
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)]
occ = 1
wholeness = 0.333
loci nb = 2
score = 5.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_57
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 1
wholeness = 0.389
loci nb = 3
score = 5.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_59
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)]
occ = 1
wholeness = 0.444
loci nb = 3
score = 5.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_85
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)]
occ = 2
wholeness = 0.444
loci nb = 4
score = 5.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_128
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 2
wholeness = 0.500
loci nb = 4
score = 5.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_157
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 2
wholeness = 0.500
loci nb = 5
score = 5.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_775
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.500
loci nb = 4
score = 4.900

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_248
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)]
occ = 2
wholeness = 0.444
loci nb = 3
score = 4.850

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_267
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)]
occ = 2
wholeness = 0.500
loci nb = 4
score = 4.850

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_337
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.500
loci nb = 4
score = 4.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_353
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 2
wholeness = 0.500
loci nb = 4
score = 4.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_478
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.500
loci nb = 4
score = 4.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_513
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.500
loci nb = 4
score = 4.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_554
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.556
loci nb = 5
score = 4.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_578
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.556
loci nb = 5
score = 4.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_36
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)]
occ = 1
wholeness = 0.389
loci nb = 3
score = 4.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_55
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)]
occ = 2
wholeness = 0.389
loci nb = 3
score = 4.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_56
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)]
occ = 2
wholeness = 0.389
loci nb = 3
score = 4.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_92
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 2
wholeness = 0.444
loci nb = 4
score = 4.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_123
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 2
wholeness = 0.444
loci nb = 4
score = 4.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_125
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 2
wholeness = 0.444
loci nb = 4
score = 4.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_809
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.556
loci nb = 5
score = 4.400

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_335
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 2
wholeness = 0.444
loci nb = 4
score = 4.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_475
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.444
loci nb = 4
score = 4.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_551
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.500
loci nb = 5
score = 4.200

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_89
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)]
occ = 1
wholeness = 0.444
loci nb = 4
score = 4.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_122
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)]
occ = 2
wholeness = 0.444
loci nb = 4
score = 4.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_162
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 2
wholeness = 0.500
loci nb = 5
score = 4.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_186
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 2
wholeness = 0.500
loci nb = 5
score = 4.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_368
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 2
wholeness = 0.500
loci nb = 5
score = 3.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_548
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.500
loci nb = 5
score = 3.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_599
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.556
loci nb = 6
score = 3.700

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_86
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)]
occ = 2
wholeness = 0.389
loci nb = 4
score = 3.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_159
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 2
wholeness = 0.444
loci nb = 5
score = 3.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_156
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)]
occ = 2
wholeness = 0.444
loci nb = 5
score = 3.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_207
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_00871', 'T4P_pilC', 6087), ('THHY002.0321.00001.C001_00872', 'T4P_pilB', 6088), ('THHY002.0321.00001.C001_00874', 'T4P_pilN', 6090), ('THHY002.0321.00001.C001_00875', 'T4P_pilO', 6091), ('THHY002.0321.00001.C001_00877', 'T4P_pilQ', 6093), ('THHY002.0321.00001.C001_00878', 'T4P_pilE', 6094)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 2
wholeness = 0.500
loci nb = 6
score = 3.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 3 (T4P_pilB, T4P_pilB, T4P_pilB)
	- T4P_pilC: 3 (T4P_pilC, T4P_pilC, T4P_pilC)
	- T4P_pilO: 3 (T4P_pilO, T4P_pilO, T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 3 (T4P_pilN, T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_781
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.722
loci nb = 4
score = 8.900

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_851
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.722
loci nb = 3
score = 8.750

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_761
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.667
loci nb = 3
score = 8.400

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_762
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.667
loci nb = 3
score = 8.400

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_341
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.667
loci nb = 4
score = 8.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_486
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.667
loci nb = 4
score = 8.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_560
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.722
loci nb = 5
score = 8.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_640
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.667
loci nb = 3
score = 8.050

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_680
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.667
loci nb = 3
score = 8.050

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_697
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.722
loci nb = 4
score = 8.050

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_798
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.722
loci nb = 4
score = 7.900

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_322
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.611
loci nb = 3
score = 7.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_323
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.611
loci nb = 3
score = 7.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_452
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.611
loci nb = 3
score = 7.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_454
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.611
loci nb = 3
score = 7.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_525
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.667
loci nb = 4
score = 7.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_526
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.667
loci nb = 4
score = 7.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_97
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 1
wholeness = 0.611
loci nb = 4
score = 7.500

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_168
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 1
wholeness = 0.667
loci nb = 5
score = 7.500

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_782
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.667
loci nb = 4
score = 7.400

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_255
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)]
occ = 1
wholeness = 0.611
loci nb = 3
score = 7.350

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_271
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)]
occ = 1
wholeness = 0.667
loci nb = 4
score = 7.350

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_357
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.667
loci nb = 4
score = 7.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_524
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.667
loci nb = 4
score = 7.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_583
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.722
loci nb = 5
score = 7.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_67
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 1
wholeness = 0.556
loci nb = 3
score = 7.000

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_69
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 1
wholeness = 0.556
loci nb = 3
score = 7.000

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_134
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 1
wholeness = 0.611
loci nb = 4
score = 7.000

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_135
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 1
wholeness = 0.611
loci nb = 4
score = 7.000

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_813
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.722
loci nb = 5
score = 6.900

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_342
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.611
loci nb = 4
score = 6.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_488
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.611
loci nb = 4
score = 6.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_561
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.667
loci nb = 5
score = 6.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_133
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 1
wholeness = 0.611
loci nb = 4
score = 6.500

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_191
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 2
wholeness = 0.667
loci nb = 5
score = 6.500

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_738
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.444
loci nb = 3
score = 6.400

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_740
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.556
loci nb = 3
score = 6.400

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 0 ()
	- T4P_pilQ: 0 ()
	- T4P_pilN: 0 ()
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_839
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.444
loci nb = 2
score = 6.250

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_840
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.556
loci nb = 2
score = 6.250

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 0 ()
	- T4P_pilQ: 0 ()
	- T4P_pilN: 0 ()
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_372
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.667
loci nb = 5
score = 6.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_559
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.667
loci nb = 5
score = 6.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_604
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.722
loci nb = 6
score = 6.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_99
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 1
wholeness = 0.556
loci nb = 4
score = 6.000

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_169
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 1
wholeness = 0.611
loci nb = 5
score = 6.000

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_723
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.389
loci nb = 2
score = 5.900

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_724
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.389
loci nb = 2
score = 5.900

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_725
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.500
loci nb = 2
score = 5.900

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 0 ()
	- T4P_pilQ: 0 ()
	- T4P_pilN: 0 ()
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_303
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.389
loci nb = 3
score = 5.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_419
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.389
loci nb = 3
score = 5.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_485
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.444
loci nb = 4
score = 5.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_489
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.556
loci nb = 4
score = 5.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 0 ()
	- T4P_pilQ: 0 ()
	- T4P_pilN: 0 ()
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_630
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.389
loci nb = 2
score = 5.550

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_659
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.389
loci nb = 2
score = 5.550

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_679
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.444
loci nb = 3
score = 5.550

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_681
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.556
loci nb = 3
score = 5.550

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 0 ()
	- T4P_pilQ: 0 ()
	- T4P_pilN: 0 ()
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_167
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 1
wholeness = 0.611
loci nb = 5
score = 5.500

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_212
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 2
wholeness = 0.667
loci nb = 6
score = 5.500

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_760
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.444
loci nb = 3
score = 5.400

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_292
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.333
loci nb = 2
score = 5.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_293
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.333
loci nb = 2
score = 5.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_403
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.333
loci nb = 2
score = 5.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_404
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.333
loci nb = 2
score = 5.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_451
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.389
loci nb = 3
score = 5.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_453
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.389
loci nb = 3
score = 5.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_455
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.500
loci nb = 3
score = 5.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 0 ()
	- T4P_pilQ: 0 ()
	- T4P_pilN: 0 ()
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_39
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)]
occ = 1
wholeness = 0.333
loci nb = 3
score = 5.000

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_96
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 1
wholeness = 0.389
loci nb = 4
score = 5.000

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_739
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.389
loci nb = 3
score = 4.900

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_237
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)]
occ = 1
wholeness = 0.333
loci nb = 2
score = 4.850

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_254
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)]
occ = 1
wholeness = 0.389
loci nb = 3
score = 4.850

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_321
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.389
loci nb = 3
score = 4.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_450
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.389
loci nb = 3
score = 4.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_523
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.444
loci nb = 4
score = 4.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_27
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)]
occ = 1
wholeness = 0.278
loci nb = 2
score = 4.500

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_28
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)]
occ = 1
wholeness = 0.278
loci nb = 2
score = 4.500

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_66
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 1
wholeness = 0.333
loci nb = 3
score = 4.500

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_68
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 1
wholeness = 0.333
loci nb = 3
score = 4.500

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_780
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.444
loci nb = 4
score = 4.400

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_304
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.333
loci nb = 3
score = 4.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_420
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.333
loci nb = 3
score = 4.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_487
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.389
loci nb = 4
score = 4.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_65
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)]
occ = 1
wholeness = 0.333
loci nb = 3
score = 4.000

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_132
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 2
wholeness = 0.389
loci nb = 4
score = 4.000

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_711
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.278
loci nb = 2
score = 3.900

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 0 ()
	- T4P_pilQ: 0 ()
	- T4P_pilN: 0 ()
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_830
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.278
loci nb = 1
score = 3.750

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 0 ()
	- T4P_pilQ: 0 ()
	- T4P_pilN: 0 ()
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_340
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)]
occ = 1
wholeness = 0.389
loci nb = 4
score = 3.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_484
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.389
loci nb = 4
score = 3.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_558
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 2
wholeness = 0.444
loci nb = 5
score = 3.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_40
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)]
occ = 1
wholeness = 0.278
loci nb = 3
score = 3.500

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_98
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 1
wholeness = 0.333
loci nb = 4
score = 3.500

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_421
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.278
loci nb = 3
score = 3.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 0 ()
	- T4P_pilQ: 0 ()
	- T4P_pilN: 0 ()
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_660
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.278
loci nb = 2
score = 3.050

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 0 ()
	- T4P_pilQ: 0 ()
	- T4P_pilN: 0 ()
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_95
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)]
occ = 1
wholeness = 0.333
loci nb = 4
score = 3.000

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_166
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01162', 'T4P_pilB', 6365), ('THHY002.0321.00001.C001_01163', 'T4P_pilC', 6366)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 2
wholeness = 0.389
loci nb = 5
score = 3.000

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 2 (T4P_pilB, T4P_pilB)
	- T4P_pilC: 2 (T4P_pilC, T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_491
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.722
loci nb = 4
score = 9.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_682
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.722
loci nb = 3
score = 9.050

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_457
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.667
loci nb = 3
score = 8.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_101
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 1
wholeness = 0.667
loci nb = 4
score = 8.500

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_256
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)]
occ = 1
wholeness = 0.667
loci nb = 3
score = 8.350

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_527
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.722
loci nb = 4
score = 8.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_71
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 1
wholeness = 0.611
loci nb = 3
score = 8.000

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_136
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 1
wholeness = 0.667
loci nb = 4
score = 7.500

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_562
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.722
loci nb = 5
score = 7.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_742
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.611
loci nb = 3
score = 6.900

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_841
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.611
loci nb = 2
score = 6.750

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_422
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.444
loci nb = 3
score = 6.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_661
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.444
loci nb = 2
score = 6.550

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_170
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 1
wholeness = 0.667
loci nb = 5
score = 6.500

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_727
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.556
loci nb = 2
score = 6.400

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_405
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.389
loci nb = 2
score = 6.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_41
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 1
wholeness = 0.389
loci nb = 3
score = 6.000

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_763
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.611
loci nb = 3
score = 5.900

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_238
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)]
occ = 1
wholeness = 0.389
loci nb = 2
score = 5.850

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_456
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.444
loci nb = 3
score = 5.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_29
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 1
wholeness = 0.333
loci nb = 2
score = 5.500

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_70
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 1
wholeness = 0.389
loci nb = 3
score = 5.000

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_783
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.611
loci nb = 4
score = 4.900

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_490
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.444
loci nb = 4
score = 4.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_712
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.333
loci nb = 2
score = 4.400

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_831
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.333
loci nb = 1
score = 4.250

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_100
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 1
wholeness = 0.389
loci nb = 4
score = 4.000

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_707
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.278
loci nb = 1
score = 3.900

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_726
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.333
loci nb = 2
score = 3.400

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_741
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01276', 'T4P_pilO', 6478), ('THHY002.0321.00001.C001_01277', 'T4P_pilN', 6479), ('THHY002.0321.00001.C001_01278', 'T4P_pilM', 6480)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.333
loci nb = 3
score = 2.400

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 2 (T4P_pilO, T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 2 (T4P_pilN, T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_458
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.667
loci nb = 3
score = 8.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_72
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 1
wholeness = 0.611
loci nb = 3
score = 8.000

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_492
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.667
loci nb = 4
score = 7.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_102
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)]
occ = 1
wholeness = 0.611
loci nb = 4
score = 7.000

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_728
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.556
loci nb = 2
score = 6.400

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_406
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.389
loci nb = 2
score = 6.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_30
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 1
wholeness = 0.333
loci nb = 2
score = 5.500

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_743
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.556
loci nb = 3
score = 5.400

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_423
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.389
loci nb = 3
score = 5.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_42
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)]
occ = 1
wholeness = 0.333
loci nb = 3
score = 4.500

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_708
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.278
loci nb = 1
score = 3.900

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_713
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01413', 'T4P_pilO', 6609), ('THHY002.0321.00001.C001_01414', 'T4P_pilN', 6610), ('THHY002.0321.00001.C001_01418', 'T4P_pilA', 6614)], [('THHY002.0321.00001.C001_01093', 'T4P_pilT', 6301)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.278
loci nb = 2
score = 2.900

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 0 ()
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 4 (T4P_pilA, T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T2SS_16
model = TFF-SF/T2SS
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01411', 'T2SS_gspD', 6607), ('THHY002.0321.00001.C001_01416', 'T2SS_gspJ', 6612), ('THHY002.0321.00001.C001_01417', 'T2SS_gspI', 6613), ('THHY002.0321.00001.C001_01419', 'T2SS_gspG', 6615), ('THHY002.0321.00001.C001_01420', 'T2SS_gspF', 6616), ('THHY002.0321.00001.C001_01421', 'T2SS_gspE', 6617)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.500
loci nb = 1
score = 5.560

mandatory genes:
	- T2SS_gspD: 1 (T2SS_gspD)
	- T2SS_gspE: 1 (T2SS_gspE)
	- T2SS_gspF: 1 (T2SS_gspF)
	- T2SS_gspG: 1 (T2SS_gspG)
	- T2SS_gspC: 0 ()
	- T2SS_gspO: 1 (T4P_pilD [THHY002.0321.00001.C001_T4P_387, THHY002.0321.00001.C001_T4P_388, THHY002.0321.00001.C001_T4P_389, THHY002.0321.00001.C001_T4P_390, THHY002.0321.00001.C001_T4P_391, THHY002.0321.00001.C001_T4P_392, THHY002.0321.00001.C001_T4P_393, THHY002.0321.00001.C001_T4P_394, THHY002.0321.00001.C001_T4P_395, THHY002.0321.00001.C001_T4P_396, THHY002.0321.00001.C001_T4P_397, THHY002.0321.00001.C001_T4P_398, THHY002.0321.00001.C001_T4P_399, THHY002.0321.00001.C001_T4P_400, THHY002.0321.00001.C001_T4P_401, THHY002.0321.00001.C001_T4P_402, THHY002.0321.00001.C001_T4P_403, THHY002.0321.00001.C001_T4P_404, THHY002.0321.00001.C001_T4P_405, THHY002.0321.00001.C001_T4P_406, THHY002.0321.00001.C001_T4P_407, THHY002.0321.00001.C001_T4P_408, THHY002.0321.00001.C001_T4P_409, THHY002.0321.00001.C001_T4P_410, THHY002.0321.00001.C001_T4P_411, THHY002.0321.00001.C001_T4P_412, THHY002.0321.00001.C001_T4P_413, THHY002.0321.00001.C001_T4P_414, THHY002.0321.00001.C001_T4P_415, THHY002.0321.00001.C001_T4P_416, THHY002.0321.00001.C001_T4P_417, THHY002.0321.00001.C001_T4P_418, THHY002.0321.00001.C001_T4P_419, THHY002.0321.00001.C001_T4P_420, THHY002.0321.00001.C001_T4P_421, THHY002.0321.00001.C001_T4P_422, THHY002.0321.00001.C001_T4P_423, THHY002.0321.00001.C001_T4P_424, THHY002.0321.00001.C001_T4P_425, THHY002.0321.00001.C001_T4P_426, THHY002.0321.00001.C001_T4P_427, THHY002.0321.00001.C001_T4P_428, THHY002.0321.00001.C001_T4P_429, THHY002.0321.00001.C001_T4P_430, THHY002.0321.00001.C001_T4P_431, THHY002.0321.00001.C001_T4P_432, THHY002.0321.00001.C001_T4P_433, THHY002.0321.00001.C001_T4P_434, THHY002.0321.00001.C001_T4P_435, THHY002.0321.00001.C001_T4P_436, THHY002.0321.00001.C001_T4P_437, THHY002.0321.00001.C001_T4P_438, THHY002.0321.00001.C001_T4P_439, THHY002.0321.00001.C001_T4P_440, THHY002.0321.00001.C001_T4P_441, THHY002.0321.00001.C001_T4P_442, THHY002.0321.00001.C001_T4P_443, THHY002.0321.00001.C001_T4P_444, THHY002.0321.00001.C001_T4P_445, THHY002.0321.00001.C001_T4P_446, THHY002.0321.00001.C001_T4P_447, THHY002.0321.00001.C001_T4P_448, THHY002.0321.00001.C001_T4P_449, THHY002.0321.00001.C001_T4P_450, THHY002.0321.00001.C001_T4P_451, THHY002.0321.00001.C001_T4P_452, THHY002.0321.00001.C001_T4P_453, THHY002.0321.00001.C001_T4P_454, THHY002.0321.00001.C001_T4P_455, THHY002.0321.00001.C001_T4P_456, THHY002.0321.00001.C001_T4P_457, THHY002.0321.00001.C001_T4P_458, THHY002.0321.00001.C001_T4P_459, THHY002.0321.00001.C001_T4P_460, THHY002.0321.00001.C001_T4P_461, THHY002.0321.00001.C001_T4P_462, THHY002.0321.00001.C001_T4P_463, THHY002.0321.00001.C001_T4P_464, THHY002.0321.00001.C001_T4P_465, THHY002.0321.00001.C001_T4P_466, THHY002.0321.00001.C001_T4P_467, THHY002.0321.00001.C001_T4P_468, THHY002.0321.00001.C001_T4P_469, THHY002.0321.00001.C001_T4P_470, THHY002.0321.00001.C001_T4P_471, THHY002.0321.00001.C001_T4P_472, THHY002.0321.00001.C001_T4P_473, THHY002.0321.00001.C001_T4P_474, THHY002.0321.00001.C001_T4P_475, THHY002.0321.00001.C001_T4P_476, THHY002.0321.00001.C001_T4P_477, THHY002.0321.00001.C001_T4P_478, THHY002.0321.00001.C001_T4P_479, THHY002.0321.00001.C001_T4P_480, THHY002.0321.00001.C001_T4P_481, THHY002.0321.00001.C001_T4P_482, THHY002.0321.00001.C001_T4P_483, THHY002.0321.00001.C001_T4P_484, THHY002.0321.00001.C001_T4P_485, THHY002.0321.00001.C001_T4P_486, THHY002.0321.00001.C001_T4P_487, THHY002.0321.00001.C001_T4P_488, THHY002.0321.00001.C001_T4P_489, THHY002.0321.00001.C001_T4P_490, THHY002.0321.00001.C001_T4P_491, THHY002.0321.00001.C001_T4P_492, THHY002.0321.00001.C001_T4P_493, THHY002.0321.00001.C001_T4P_494, THHY002.0321.00001.C001_T4P_495, THHY002.0321.00001.C001_T4P_496, THHY002.0321.00001.C001_T4P_497, THHY002.0321.00001.C001_T4P_498, THHY002.0321.00001.C001_T4P_499, THHY002.0321.00001.C001_T4P_500, THHY002.0321.00001.C001_T4P_501, THHY002.0321.00001.C001_T4P_502, THHY002.0321.00001.C001_T4P_503, THHY002.0321.00001.C001_T4P_504, THHY002.0321.00001.C001_T4P_505, THHY002.0321.00001.C001_T4P_506, THHY002.0321.00001.C001_T4P_507, THHY002.0321.00001.C001_T4P_508, THHY002.0321.00001.C001_T4P_509, THHY002.0321.00001.C001_T4P_510, THHY002.0321.00001.C001_T4P_511, THHY002.0321.00001.C001_T4P_512, THHY002.0321.00001.C001_T4P_513, THHY002.0321.00001.C001_T4P_514, THHY002.0321.00001.C001_T4P_515, THHY002.0321.00001.C001_T4P_516, THHY002.0321.00001.C001_T4P_517, THHY002.0321.00001.C001_T4P_518, THHY002.0321.00001.C001_T4P_519, THHY002.0321.00001.C001_T4P_520, THHY002.0321.00001.C001_T4P_521, THHY002.0321.00001.C001_T4P_522, THHY002.0321.00001.C001_T4P_523, THHY002.0321.00001.C001_T4P_524, THHY002.0321.00001.C001_T4P_525, THHY002.0321.00001.C001_T4P_526, THHY002.0321.00001.C001_T4P_527, THHY002.0321.00001.C001_T4P_528, THHY002.0321.00001.C001_T4P_529, THHY002.0321.00001.C001_T4P_530, THHY002.0321.00001.C001_T4P_531, THHY002.0321.00001.C001_T4P_532, THHY002.0321.00001.C001_T4P_533, THHY002.0321.00001.C001_T4P_534, THHY002.0321.00001.C001_T4P_535, THHY002.0321.00001.C001_T4P_536, THHY002.0321.00001.C001_T4P_537, THHY002.0321.00001.C001_T4P_538, THHY002.0321.00001.C001_T4P_539, THHY002.0321.00001.C001_T4P_540, THHY002.0321.00001.C001_T4P_541, THHY002.0321.00001.C001_T4P_542, THHY002.0321.00001.C001_T4P_543, THHY002.0321.00001.C001_T4P_544, THHY002.0321.00001.C001_T4P_545, THHY002.0321.00001.C001_T4P_546, THHY002.0321.00001.C001_T4P_547, THHY002.0321.00001.C001_T4P_548, THHY002.0321.00001.C001_T4P_549, THHY002.0321.00001.C001_T4P_550, THHY002.0321.00001.C001_T4P_551, THHY002.0321.00001.C001_T4P_552, THHY002.0321.00001.C001_T4P_553, THHY002.0321.00001.C001_T4P_554, THHY002.0321.00001.C001_T4P_555, THHY002.0321.00001.C001_T4P_556, THHY002.0321.00001.C001_T4P_557, THHY002.0321.00001.C001_T4P_558, THHY002.0321.00001.C001_T4P_559, THHY002.0321.00001.C001_T4P_560, THHY002.0321.00001.C001_T4P_561, THHY002.0321.00001.C001_T4P_562, THHY002.0321.00001.C001_T4P_563, THHY002.0321.00001.C001_T4P_564, THHY002.0321.00001.C001_T4P_565, THHY002.0321.00001.C001_T4P_566, THHY002.0321.00001.C001_T4P_567, THHY002.0321.00001.C001_T4P_568, THHY002.0321.00001.C001_T4P_569, THHY002.0321.00001.C001_T4P_570, THHY002.0321.00001.C001_T4P_571, THHY002.0321.00001.C001_T4P_572, THHY002.0321.00001.C001_T4P_573, THHY002.0321.00001.C001_T4P_574, THHY002.0321.00001.C001_T4P_575, THHY002.0321.00001.C001_T4P_576, THHY002.0321.00001.C001_T4P_577, THHY002.0321.00001.C001_T4P_578, THHY002.0321.00001.C001_T4P_579, THHY002.0321.00001.C001_T4P_580, THHY002.0321.00001.C001_T4P_581, THHY002.0321.00001.C001_T4P_582, THHY002.0321.00001.C001_T4P_583, THHY002.0321.00001.C001_T4P_584, THHY002.0321.00001.C001_T4P_585, THHY002.0321.00001.C001_T4P_586, THHY002.0321.00001.C001_T4P_587, THHY002.0321.00001.C001_T4P_588, THHY002.0321.00001.C001_T4P_589, THHY002.0321.00001.C001_T4P_590, THHY002.0321.00001.C001_T4P_591, THHY002.0321.00001.C001_T4P_592, THHY002.0321.00001.C001_T4P_593, THHY002.0321.00001.C001_T4P_594, THHY002.0321.00001.C001_T4P_595, THHY002.0321.00001.C001_T4P_596, THHY002.0321.00001.C001_T4P_597, THHY002.0321.00001.C001_T4P_598, THHY002.0321.00001.C001_T4P_599, THHY002.0321.00001.C001_T4P_600, THHY002.0321.00001.C001_T4P_601, THHY002.0321.00001.C001_T4P_602, THHY002.0321.00001.C001_T4P_603, THHY002.0321.00001.C001_T4P_604, THHY002.0321.00001.C001_T4P_605, THHY002.0321.00001.C001_T4P_606, THHY002.0321.00001.C001_T4P_607, THHY002.0321.00001.C001_T4P_608, THHY002.0321.00001.C001_T4P_609, THHY002.0321.00001.C001_T4P_610, THHY002.0321.00001.C001_T4P_611, THHY002.0321.00001.C001_T4P_612, THHY002.0321.00001.C001_T4P_613, THHY002.0321.00001.C001_T4P_614, THHY002.0321.00001.C001_T4P_615, THHY002.0321.00001.C001_T4P_616, THHY002.0321.00001.C001_T4P_617, THHY002.0321.00001.C001_T4P_618, THHY002.0321.00001.C001_T4P_619, THHY002.0321.00001.C001_T4P_620, THHY002.0321.00001.C001_T4P_647, THHY002.0321.00001.C001_T4P_648, THHY002.0321.00001.C001_T4P_649, THHY002.0321.00001.C001_T4P_650, THHY002.0321.00001.C001_T4P_651, THHY002.0321.00001.C001_T4P_652, THHY002.0321.00001.C001_T4P_653, THHY002.0321.00001.C001_T4P_654, THHY002.0321.00001.C001_T4P_655, THHY002.0321.00001.C001_T4P_656, THHY002.0321.00001.C001_T4P_657, THHY002.0321.00001.C001_T4P_658, THHY002.0321.00001.C001_T4P_659, THHY002.0321.00001.C001_T4P_660, THHY002.0321.00001.C001_T4P_661, THHY002.0321.00001.C001_T4P_662, THHY002.0321.00001.C001_T4P_663, THHY002.0321.00001.C001_T4P_664, THHY002.0321.00001.C001_T4P_665, THHY002.0321.00001.C001_T4P_666, THHY002.0321.00001.C001_T4P_667, THHY002.0321.00001.C001_T4P_668, THHY002.0321.00001.C001_T4P_669, THHY002.0321.00001.C001_T4P_670, THHY002.0321.00001.C001_T4P_671, THHY002.0321.00001.C001_T4P_672, THHY002.0321.00001.C001_T4P_673, THHY002.0321.00001.C001_T4P_674, THHY002.0321.00001.C001_T4P_675, THHY002.0321.00001.C001_T4P_676, THHY002.0321.00001.C001_T4P_677, THHY002.0321.00001.C001_T4P_678, THHY002.0321.00001.C001_T4P_679, THHY002.0321.00001.C001_T4P_680, THHY002.0321.00001.C001_T4P_681, THHY002.0321.00001.C001_T4P_682, THHY002.0321.00001.C001_T4P_683, THHY002.0321.00001.C001_T4P_684, THHY002.0321.00001.C001_T4P_685, THHY002.0321.00001.C001_T4P_686, THHY002.0321.00001.C001_T4P_687, THHY002.0321.00001.C001_T4P_688, THHY002.0321.00001.C001_T4P_689, THHY002.0321.00001.C001_T4P_690, THHY002.0321.00001.C001_T4P_691, THHY002.0321.00001.C001_T4P_692, THHY002.0321.00001.C001_T4P_693, THHY002.0321.00001.C001_T4P_694, THHY002.0321.00001.C001_T4P_695, THHY002.0321.00001.C001_T4P_696, THHY002.0321.00001.C001_T4P_697, THHY002.0321.00001.C001_T4P_698, THHY002.0321.00001.C001_T4P_699, THHY002.0321.00001.C001_T4P_700, THHY002.0321.00001.C001_T4P_701, THHY002.0321.00001.C001_T4P_702, THHY002.0321.00001.C001_T4P_703, THHY002.0321.00001.C001_T4P_704, THHY002.0321.00001.C001_T4P_705, THHY002.0321.00001.C001_T4P_706, THHY002.0321.00001.C001_T4P_707, THHY002.0321.00001.C001_T4P_708, THHY002.0321.00001.C001_T4P_709, THHY002.0321.00001.C001_T4P_710, THHY002.0321.00001.C001_T4P_711, THHY002.0321.00001.C001_T4P_712, THHY002.0321.00001.C001_T4P_713, THHY002.0321.00001.C001_T4P_714, THHY002.0321.00001.C001_T4P_715, THHY002.0321.00001.C001_T4P_716, THHY002.0321.00001.C001_T4P_717, THHY002.0321.00001.C001_T4P_718, THHY002.0321.00001.C001_T4P_719, THHY002.0321.00001.C001_T4P_720, THHY002.0321.00001.C001_T4P_721, THHY002.0321.00001.C001_T4P_722, THHY002.0321.00001.C001_T4P_723, THHY002.0321.00001.C001_T4P_724, THHY002.0321.00001.C001_T4P_725, THHY002.0321.00001.C001_T4P_726, THHY002.0321.00001.C001_T4P_727, THHY002.0321.00001.C001_T4P_728, THHY002.0321.00001.C001_T4P_729, THHY002.0321.00001.C001_T4P_730, THHY002.0321.00001.C001_T4P_731, THHY002.0321.00001.C001_T4P_732, THHY002.0321.00001.C001_T4P_733, THHY002.0321.00001.C001_T4P_734, THHY002.0321.00001.C001_T4P_735, THHY002.0321.00001.C001_T4P_736, THHY002.0321.00001.C001_T4P_737, THHY002.0321.00001.C001_T4P_738, THHY002.0321.00001.C001_T4P_739, THHY002.0321.00001.C001_T4P_740, THHY002.0321.00001.C001_T4P_741, THHY002.0321.00001.C001_T4P_742, THHY002.0321.00001.C001_T4P_743, THHY002.0321.00001.C001_T4P_744, THHY002.0321.00001.C001_T4P_745, THHY002.0321.00001.C001_T4P_746, THHY002.0321.00001.C001_T4P_747, THHY002.0321.00001.C001_T4P_748, THHY002.0321.00001.C001_T4P_749, THHY002.0321.00001.C001_T4P_750, THHY002.0321.00001.C001_T4P_751, THHY002.0321.00001.C001_T4P_752, THHY002.0321.00001.C001_T4P_753, THHY002.0321.00001.C001_T4P_754, THHY002.0321.00001.C001_T4P_755, THHY002.0321.00001.C001_T4P_756, THHY002.0321.00001.C001_T4P_757, THHY002.0321.00001.C001_T4P_758, THHY002.0321.00001.C001_T4P_759, THHY002.0321.00001.C001_T4P_760, THHY002.0321.00001.C001_T4P_761, THHY002.0321.00001.C001_T4P_762, THHY002.0321.00001.C001_T4P_763, THHY002.0321.00001.C001_T4P_764, THHY002.0321.00001.C001_T4P_765, THHY002.0321.00001.C001_T4P_766, THHY002.0321.00001.C001_T4P_767, THHY002.0321.00001.C001_T4P_768, THHY002.0321.00001.C001_T4P_769, THHY002.0321.00001.C001_T4P_770, THHY002.0321.00001.C001_T4P_771, THHY002.0321.00001.C001_T4P_772, THHY002.0321.00001.C001_T4P_773, THHY002.0321.00001.C001_T4P_774, THHY002.0321.00001.C001_T4P_775, THHY002.0321.00001.C001_T4P_776, THHY002.0321.00001.C001_T4P_777, THHY002.0321.00001.C001_T4P_778, THHY002.0321.00001.C001_T4P_779, THHY002.0321.00001.C001_T4P_780, THHY002.0321.00001.C001_T4P_781, THHY002.0321.00001.C001_T4P_782, THHY002.0321.00001.C001_T4P_783, THHY002.0321.00001.C001_T4P_784, THHY002.0321.00001.C001_T4P_785, THHY002.0321.00001.C001_T4P_786, THHY002.0321.00001.C001_T4P_787, THHY002.0321.00001.C001_T4P_788, THHY002.0321.00001.C001_T4P_789, THHY002.0321.00001.C001_T4P_790, THHY002.0321.00001.C001_T4P_791, THHY002.0321.00001.C001_T4P_792, THHY002.0321.00001.C001_T4P_793, THHY002.0321.00001.C001_T4P_794, THHY002.0321.00001.C001_T4P_795, THHY002.0321.00001.C001_T4P_796, THHY002.0321.00001.C001_T4P_797, THHY002.0321.00001.C001_T4P_798, THHY002.0321.00001.C001_T4P_799, THHY002.0321.00001.C001_T4P_800, THHY002.0321.00001.C001_T4P_801, THHY002.0321.00001.C001_T4P_802, THHY002.0321.00001.C001_T4P_803, THHY002.0321.00001.C001_T4P_804, THHY002.0321.00001.C001_T4P_805, THHY002.0321.00001.C001_T4P_806, THHY002.0321.00001.C001_T4P_807, THHY002.0321.00001.C001_T4P_808, THHY002.0321.00001.C001_T4P_809, THHY002.0321.00001.C001_T4P_810, THHY002.0321.00001.C001_T4P_811, THHY002.0321.00001.C001_T4P_812, THHY002.0321.00001.C001_T4P_813, THHY002.0321.00001.C001_T4P_814, THHY002.0321.00001.C001_T4P_815, THHY002.0321.00001.C001_T4P_816, THHY002.0321.00001.C001_T4P_817, THHY002.0321.00001.C001_T4P_818, THHY002.0321.00001.C001_T4P_819, THHY002.0321.00001.C001_T4P_820, THHY002.0321.00001.C001_T4P_821, THHY002.0321.00001.C001_T4P_822, THHY002.0321.00001.C001_T4P_823, THHY002.0321.00001.C001_T4P_824, THHY002.0321.00001.C001_T4P_825, THHY002.0321.00001.C001_T4P_826, THHY002.0321.00001.C001_T4P_827, THHY002.0321.00001.C001_T4P_828, THHY002.0321.00001.C001_T4P_829, THHY002.0321.00001.C001_T4P_830, THHY002.0321.00001.C001_T4P_831, THHY002.0321.00001.C001_T4P_832, THHY002.0321.00001.C001_T4P_833, THHY002.0321.00001.C001_T4P_834, THHY002.0321.00001.C001_T4P_835, THHY002.0321.00001.C001_T4P_836, THHY002.0321.00001.C001_T4P_837, THHY002.0321.00001.C001_T4P_838, THHY002.0321.00001.C001_T4P_839, THHY002.0321.00001.C001_T4P_840, THHY002.0321.00001.C001_T4P_841, THHY002.0321.00001.C001_T4P_842, THHY002.0321.00001.C001_T4P_843, THHY002.0321.00001.C001_T4P_844, THHY002.0321.00001.C001_T4P_845, THHY002.0321.00001.C001_T4P_846, THHY002.0321.00001.C001_T4P_847, THHY002.0321.00001.C001_T4P_848, THHY002.0321.00001.C001_T4P_849, THHY002.0321.00001.C001_T4P_850, THHY002.0321.00001.C001_T4P_851, THHY002.0321.00001.C001_T4P_852, THHY002.0321.00001.C001_T4P_853, THHY002.0321.00001.C001_T4P_854, THHY002.0321.00001.C001_T4P_855, THHY002.0321.00001.C001_T4P_856, THHY002.0321.00001.C001_T4P_857])

accessory genes:
	- T2SS_gspM: 0 ()
	- T2SS_gspH: 0 ()
	- T2SS_gspI: 1 (T2SS_gspI)
	- T2SS_gspJ: 1 (T2SS_gspJ)
	- T2SS_gspK: 0 ()
	- T2SS_gspN: 0 ()
	- T2SS_gspL: 0 ()
	- Tad_tadD: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T2SS_15
model = TFF-SF/T2SS
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01411', 'T2SS_gspD', 6607), ('THHY002.0321.00001.C001_01416', 'T2SS_gspJ', 6612), ('THHY002.0321.00001.C001_01417', 'T2SS_gspI', 6613), ('THHY002.0321.00001.C001_01419', 'T2SS_gspG', 6615), ('THHY002.0321.00001.C001_01420', 'T2SS_gspF', 6616), ('THHY002.0321.00001.C001_01421', 'T2SS_gspE', 6617)]
occ = 1
wholeness = 0.429
loci nb = 1
score = 5.000

mandatory genes:
	- T2SS_gspD: 1 (T2SS_gspD)
	- T2SS_gspE: 1 (T2SS_gspE)
	- T2SS_gspF: 1 (T2SS_gspF)
	- T2SS_gspG: 1 (T2SS_gspG)
	- T2SS_gspC: 0 ()
	- T2SS_gspO: 0 ()

accessory genes:
	- T2SS_gspM: 0 ()
	- T2SS_gspH: 0 ()
	- T2SS_gspI: 1 (T2SS_gspI)
	- T2SS_gspJ: 1 (T2SS_gspJ)
	- T2SS_gspK: 0 ()
	- T2SS_gspN: 0 ()
	- T2SS_gspL: 0 ()
	- Tad_tadD: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_424
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.556
loci nb = 3
score = 6.700

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 0 ()
	- T4P_pilQ: 0 ()
	- T4P_pilN: 0 ()
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_662
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.556
loci nb = 2
score = 6.550

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 0 ()
	- T4P_pilQ: 0 ()
	- T4P_pilN: 0 ()
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_407
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_02022', 'T4P_pilV', 7205), ('THHY002.0321.00001.C001_02023', 'T4P_pilW', 7206), ('THHY002.0321.00001.C001_02024', 'T4P_pilX', 7207), ('THHY002.0321.00001.C001_02025', 'T4P_pilY', 7208), ('THHY002.0321.00001.C001_02026', 'T4P_fimT', 7209)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.500
loci nb = 2
score = 6.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 0 ()
	- T4P_pilQ: 0 ()
	- T4P_pilN: 0 ()
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 1 (T4P_pilX)
	- T4P_fimT: 1 (T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_391
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_00025', 'T4P_pilA', 5268), ('THHY002.0321.00001.C001_00026', 'T4P_pilA', 5269), ('THHY002.0321.00001.C001_00028', 'T4P_pilA', 5270)], [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.278
loci nb = 2
score = 4.200

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 0 ()
	- T4P_pilQ: 0 ()
	- T4P_pilN: 0 ()
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 3 (T4P_pilA, T4P_pilA, T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = THHY002.0321.00001.C001_T4P_649
model = TFF-SF/T4P
replicon = THHY002.0321.00001.C001
clusters = [('THHY002.0321.00001.C001_01618', 'T4P_pilC', 6808), ('THHY002.0321.00001.C001_01619', 'T4P_pilT', 6809), ('THHY002.0321.00001.C001_01620', 'T4P_pilB', 6810)], [('THHY002.0321.00001.C001_00220', 'T4P_pilA', 5457)], [('THHY002.0321.00001.C001_01147', 'T4P_pilD', 6354)]
occ = 1
wholeness = 0.278
loci nb = 1
score = 4.050

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 0 ()
	- T4P_pilQ: 0 ()
	- T4P_pilN: 0 ()
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [THHY002.0321.00001.C001_T2SS_16])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = XAOR001.0321.00001.C001_T2SS_862
model = TFF-SF/T2SS
replicon = XAOR001.0321.00001.C001
clusters = [('XAOR001.0321.00001.C001_00037', 'Tad_tadD', 7362), ('XAOR001.0321.00001.C001_00040', 'Tad_tadD', 7365)], [('XAOR001.0321.00001.C001_03012', 'T2SS_gspD', 9820), ('XAOR001.0321.00001.C001_03013', 'T2SS_gspN', 9821), ('XAOR001.0321.00001.C001_03014', 'T2SS_gspM', 9822), ('XAOR001.0321.00001.C001_03015', 'T2SS_gspL', 9823), ('XAOR001.0321.00001.C001_03016', 'T2SS_gspK', 9824), ('XAOR001.0321.00001.C001_03017', 'T2SS_gspJ', 9825), ('XAOR001.0321.00001.C001_03018', 'T2SS_gspI', 9826), ('XAOR001.0321.00001.C001_03019', 'T2SS_gspH', 9827), ('XAOR001.0321.00001.C001_03020', 'T2SS_gspG', 9828), ('XAOR001.0321.00001.C001_03021', 'T2SS_gspF', 9829), ('XAOR001.0321.00001.C001_03023', 'T2SS_gspE', 9831)], [('XAOR001.0321.00001.C001_02935', 'T4P_pilD', 9760)]
occ = 1
wholeness = 0.929
loci nb = 2
score = 8.560

mandatory genes:
	- T2SS_gspD: 1 (T2SS_gspD)
	- T2SS_gspE: 1 (T2SS_gspE)
	- T2SS_gspF: 1 (T2SS_gspF)
	- T2SS_gspG: 1 (T2SS_gspG)
	- T2SS_gspC: 0 ()
	- T2SS_gspO: 1 (T4P_pilD [XAOR001.0321.00001.C001_T4P_865, XAOR001.0321.00001.C001_T4P_866, XAOR001.0321.00001.C001_T4P_867, XAOR001.0321.00001.C001_T4P_869, XAOR001.0321.00001.C001_T4P_870, XAOR001.0321.00001.C001_T4P_871, XAOR001.0321.00001.C001_T4P_872, XAOR001.0321.00001.C001_T4P_873, XAOR001.0321.00001.C001_T4P_876, XAOR001.0321.00001.C001_T4P_877, XAOR001.0321.00001.C001_T4P_878, XAOR001.0321.00001.C001_T4P_880, XAOR001.0321.00001.C001_T4P_881, XAOR001.0321.00001.C001_T4P_882, XAOR001.0321.00001.C001_T4P_883])

accessory genes:
	- T2SS_gspM: 1 (T2SS_gspM)
	- T2SS_gspH: 1 (T2SS_gspH)
	- T2SS_gspI: 1 (T2SS_gspI)
	- T2SS_gspJ: 1 (T2SS_gspJ)
	- T2SS_gspK: 1 (T2SS_gspK)
	- T2SS_gspN: 1 (T2SS_gspN)
	- T2SS_gspL: 1 (T2SS_gspL)
	- Tad_tadD: 2 (Tad_tadD, Tad_tadD)

neutral genes:

============================================================
system id = XAOR001.0321.00001.C001_T2SS_860
model = TFF-SF/T2SS
replicon = XAOR001.0321.00001.C001
clusters = [('XAOR001.0321.00001.C001_00037', 'Tad_tadD', 7362), ('XAOR001.0321.00001.C001_00040', 'Tad_tadD', 7365)], [('XAOR001.0321.00001.C001_03012', 'T2SS_gspD', 9820), ('XAOR001.0321.00001.C001_03013', 'T2SS_gspN', 9821), ('XAOR001.0321.00001.C001_03014', 'T2SS_gspM', 9822), ('XAOR001.0321.00001.C001_03015', 'T2SS_gspL', 9823), ('XAOR001.0321.00001.C001_03016', 'T2SS_gspK', 9824), ('XAOR001.0321.00001.C001_03017', 'T2SS_gspJ', 9825), ('XAOR001.0321.00001.C001_03018', 'T2SS_gspI', 9826), ('XAOR001.0321.00001.C001_03019', 'T2SS_gspH', 9827), ('XAOR001.0321.00001.C001_03020', 'T2SS_gspG', 9828), ('XAOR001.0321.00001.C001_03021', 'T2SS_gspF', 9829), ('XAOR001.0321.00001.C001_03023', 'T2SS_gspE', 9831)]
occ = 1
wholeness = 0.857
loci nb = 2
score = 8.000

mandatory genes:
	- T2SS_gspD: 1 (T2SS_gspD)
	- T2SS_gspE: 1 (T2SS_gspE)
	- T2SS_gspF: 1 (T2SS_gspF)
	- T2SS_gspG: 1 (T2SS_gspG)
	- T2SS_gspC: 0 ()
	- T2SS_gspO: 0 ()

accessory genes:
	- T2SS_gspM: 1 (T2SS_gspM)
	- T2SS_gspH: 1 (T2SS_gspH)
	- T2SS_gspI: 1 (T2SS_gspI)
	- T2SS_gspJ: 1 (T2SS_gspJ)
	- T2SS_gspK: 1 (T2SS_gspK)
	- T2SS_gspN: 1 (T2SS_gspN)
	- T2SS_gspL: 1 (T2SS_gspL)
	- Tad_tadD: 2 (Tad_tadD, Tad_tadD)

neutral genes:

============================================================
system id = XAOR001.0321.00001.C001_T4P_883
model = TFF-SF/T4P
replicon = XAOR001.0321.00001.C001
clusters = [('XAOR001.0321.00001.C001_00240', 'T4P_pilM', 7530), ('XAOR001.0321.00001.C001_00241', 'T4P_pilN', 7531), ('XAOR001.0321.00001.C001_00242', 'T4P_pilO', 7532), ('XAOR001.0321.00001.C001_00243', 'T4P_pilP', 7533), ('XAOR001.0321.00001.C001_00244', 'T4P_pilQ', 7534)], [('XAOR001.0321.00001.C001_00601', 'T4P_pilU', 7819), ('XAOR001.0321.00001.C001_00602', 'T4P_pilT', 7820)], [('XAOR001.0321.00001.C001_00872', 'T4P_fimT', 8028), ('XAOR001.0321.00001.C001_00873', 'T4P_pilV', 8029), ('XAOR001.0321.00001.C001_00874', 'T4P_pilW', 8030), ('XAOR001.0321.00001.C001_00876', 'T4P_pilY', 8032), ('XAOR001.0321.00001.C001_00877', 'T4P_pilE', 8033), ('XAOR001.0321.00001.C001_00879', 'T4P_fimT', 8034)], [('XAOR001.0321.00001.C001_02929', 'T4P_pilB', 9754), ('XAOR001.0321.00001.C001_02933', 'T4P_pilE', 9758), ('XAOR001.0321.00001.C001_02934', 'T4P_pilC', 9759), ('XAOR001.0321.00001.C001_02935', 'T4P_pilD', 9760)], [('XAOR001.0321.00001.C001_03253', 'T4P_pilA', 10027)]
occ = 1
wholeness = 0.889
loci nb = 4
score = 11.350

mandatory genes:
	- T4P_pilE: 2 (T4P_pilE, T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [XAOR001.0321.00001.C001_T2SS_861, XAOR001.0321.00001.C001_T2SS_862])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 0 ()
	- T4P_fimT: 2 (T4P_fimT, T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 1 (T4P_pilU)
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = XAOR001.0321.00001.C001_T4P_872
model = TFF-SF/T4P
replicon = XAOR001.0321.00001.C001
clusters = [('XAOR001.0321.00001.C001_00240', 'T4P_pilM', 7530), ('XAOR001.0321.00001.C001_00241', 'T4P_pilN', 7531), ('XAOR001.0321.00001.C001_00242', 'T4P_pilO', 7532), ('XAOR001.0321.00001.C001_00243', 'T4P_pilP', 7533), ('XAOR001.0321.00001.C001_00244', 'T4P_pilQ', 7534)], [('XAOR001.0321.00001.C001_00601', 'T4P_pilU', 7819), ('XAOR001.0321.00001.C001_00602', 'T4P_pilT', 7820)], [('XAOR001.0321.00001.C001_00872', 'T4P_fimT', 8028), ('XAOR001.0321.00001.C001_00873', 'T4P_pilV', 8029), ('XAOR001.0321.00001.C001_00874', 'T4P_pilW', 8030), ('XAOR001.0321.00001.C001_00876', 'T4P_pilY', 8032), ('XAOR001.0321.00001.C001_00877', 'T4P_pilE', 8033), ('XAOR001.0321.00001.C001_00879', 'T4P_fimT', 8034)], [('XAOR001.0321.00001.C001_02929', 'T4P_pilB', 9754), ('XAOR001.0321.00001.C001_02933', 'T4P_pilE', 9758), ('XAOR001.0321.00001.C001_02934', 'T4P_pilC', 9759), ('XAOR001.0321.00001.C001_02935', 'T4P_pilD', 9760)]
occ = 1
wholeness = 0.833
loci nb = 4
score = 11.000

mandatory genes:
	- T4P_pilE: 2 (T4P_pilE, T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [XAOR001.0321.00001.C001_T2SS_861, XAOR001.0321.00001.C001_T2SS_862])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 0 ()
	- T4P_fimT: 2 (T4P_fimT, T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 1 (T4P_pilU)
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = XAOR001.0321.00001.C001_T4P_880
model = TFF-SF/T4P
replicon = XAOR001.0321.00001.C001
clusters = [('XAOR001.0321.00001.C001_00240', 'T4P_pilM', 7530), ('XAOR001.0321.00001.C001_00241', 'T4P_pilN', 7531), ('XAOR001.0321.00001.C001_00242', 'T4P_pilO', 7532), ('XAOR001.0321.00001.C001_00243', 'T4P_pilP', 7533), ('XAOR001.0321.00001.C001_00244', 'T4P_pilQ', 7534)], [('XAOR001.0321.00001.C001_00601', 'T4P_pilU', 7819), ('XAOR001.0321.00001.C001_00602', 'T4P_pilT', 7820)], [('XAOR001.0321.00001.C001_02929', 'T4P_pilB', 9754), ('XAOR001.0321.00001.C001_02933', 'T4P_pilE', 9758), ('XAOR001.0321.00001.C001_02934', 'T4P_pilC', 9759), ('XAOR001.0321.00001.C001_02935', 'T4P_pilD', 9760)], [('XAOR001.0321.00001.C001_03253', 'T4P_pilA', 10027)]
occ = 1
wholeness = 0.667
loci nb = 3
score = 9.850

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [XAOR001.0321.00001.C001_T2SS_861, XAOR001.0321.00001.C001_T2SS_862])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 1 (T4P_pilU)
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = XAOR001.0321.00001.C001_T4P_881
model = TFF-SF/T4P
replicon = XAOR001.0321.00001.C001
clusters = [('XAOR001.0321.00001.C001_00240', 'T4P_pilM', 7530), ('XAOR001.0321.00001.C001_00241', 'T4P_pilN', 7531), ('XAOR001.0321.00001.C001_00242', 'T4P_pilO', 7532), ('XAOR001.0321.00001.C001_00243', 'T4P_pilP', 7533), ('XAOR001.0321.00001.C001_00244', 'T4P_pilQ', 7534)], [('XAOR001.0321.00001.C001_00872', 'T4P_fimT', 8028), ('XAOR001.0321.00001.C001_00873', 'T4P_pilV', 8029), ('XAOR001.0321.00001.C001_00874', 'T4P_pilW', 8030), ('XAOR001.0321.00001.C001_00876', 'T4P_pilY', 8032), ('XAOR001.0321.00001.C001_00877', 'T4P_pilE', 8033), ('XAOR001.0321.00001.C001_00879', 'T4P_fimT', 8034)], [('XAOR001.0321.00001.C001_02929', 'T4P_pilB', 9754), ('XAOR001.0321.00001.C001_02933', 'T4P_pilE', 9758), ('XAOR001.0321.00001.C001_02934', 'T4P_pilC', 9759), ('XAOR001.0321.00001.C001_02935', 'T4P_pilD', 9760)], [('XAOR001.0321.00001.C001_03253', 'T4P_pilA', 10027)]
occ = 1
wholeness = 0.778
loci nb = 3
score = 9.850

mandatory genes:
	- T4P_pilE: 2 (T4P_pilE, T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [XAOR001.0321.00001.C001_T2SS_861, XAOR001.0321.00001.C001_T2SS_862])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 0 ()
	- T4P_fimT: 2 (T4P_fimT, T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = XAOR001.0321.00001.C001_T4P_869
model = TFF-SF/T4P
replicon = XAOR001.0321.00001.C001
clusters = [('XAOR001.0321.00001.C001_00240', 'T4P_pilM', 7530), ('XAOR001.0321.00001.C001_00241', 'T4P_pilN', 7531), ('XAOR001.0321.00001.C001_00242', 'T4P_pilO', 7532), ('XAOR001.0321.00001.C001_00243', 'T4P_pilP', 7533), ('XAOR001.0321.00001.C001_00244', 'T4P_pilQ', 7534)], [('XAOR001.0321.00001.C001_00601', 'T4P_pilU', 7819), ('XAOR001.0321.00001.C001_00602', 'T4P_pilT', 7820)], [('XAOR001.0321.00001.C001_02929', 'T4P_pilB', 9754), ('XAOR001.0321.00001.C001_02933', 'T4P_pilE', 9758), ('XAOR001.0321.00001.C001_02934', 'T4P_pilC', 9759), ('XAOR001.0321.00001.C001_02935', 'T4P_pilD', 9760)]
occ = 1
wholeness = 0.611
loci nb = 3
score = 9.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [XAOR001.0321.00001.C001_T2SS_861, XAOR001.0321.00001.C001_T2SS_862])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 1 (T4P_pilU)
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = XAOR001.0321.00001.C001_T4P_870
model = TFF-SF/T4P
replicon = XAOR001.0321.00001.C001
clusters = [('XAOR001.0321.00001.C001_00240', 'T4P_pilM', 7530), ('XAOR001.0321.00001.C001_00241', 'T4P_pilN', 7531), ('XAOR001.0321.00001.C001_00242', 'T4P_pilO', 7532), ('XAOR001.0321.00001.C001_00243', 'T4P_pilP', 7533), ('XAOR001.0321.00001.C001_00244', 'T4P_pilQ', 7534)], [('XAOR001.0321.00001.C001_00872', 'T4P_fimT', 8028), ('XAOR001.0321.00001.C001_00873', 'T4P_pilV', 8029), ('XAOR001.0321.00001.C001_00874', 'T4P_pilW', 8030), ('XAOR001.0321.00001.C001_00876', 'T4P_pilY', 8032), ('XAOR001.0321.00001.C001_00877', 'T4P_pilE', 8033), ('XAOR001.0321.00001.C001_00879', 'T4P_fimT', 8034)], [('XAOR001.0321.00001.C001_02929', 'T4P_pilB', 9754), ('XAOR001.0321.00001.C001_02933', 'T4P_pilE', 9758), ('XAOR001.0321.00001.C001_02934', 'T4P_pilC', 9759), ('XAOR001.0321.00001.C001_02935', 'T4P_pilD', 9760)]
occ = 1
wholeness = 0.722
loci nb = 3
score = 9.500

mandatory genes:
	- T4P_pilE: 2 (T4P_pilE, T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [XAOR001.0321.00001.C001_T2SS_861, XAOR001.0321.00001.C001_T2SS_862])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 0 ()
	- T4P_fimT: 2 (T4P_fimT, T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = XAOR001.0321.00001.C001_T4P_879
model = TFF-SF/T4P
replicon = XAOR001.0321.00001.C001
clusters = [('XAOR001.0321.00001.C001_00240', 'T4P_pilM', 7530), ('XAOR001.0321.00001.C001_00241', 'T4P_pilN', 7531), ('XAOR001.0321.00001.C001_00242', 'T4P_pilO', 7532), ('XAOR001.0321.00001.C001_00243', 'T4P_pilP', 7533), ('XAOR001.0321.00001.C001_00244', 'T4P_pilQ', 7534)], [('XAOR001.0321.00001.C001_00601', 'T4P_pilU', 7819), ('XAOR001.0321.00001.C001_00602', 'T4P_pilT', 7820)], [('XAOR001.0321.00001.C001_00872', 'T4P_fimT', 8028), ('XAOR001.0321.00001.C001_00873', 'T4P_pilV', 8029), ('XAOR001.0321.00001.C001_00874', 'T4P_pilW', 8030), ('XAOR001.0321.00001.C001_00876', 'T4P_pilY', 8032), ('XAOR001.0321.00001.C001_00877', 'T4P_pilE', 8033), ('XAOR001.0321.00001.C001_00879', 'T4P_fimT', 8034)], [('XAOR001.0321.00001.C001_03253', 'T4P_pilA', 10027)]
occ = 1
wholeness = 0.722
loci nb = 3
score = 8.850

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 0 ()
	- T4P_fimT: 2 (T4P_fimT, T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 1 (T4P_pilU)
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = XAOR001.0321.00001.C001_T4P_868
model = TFF-SF/T4P
replicon = XAOR001.0321.00001.C001
clusters = [('XAOR001.0321.00001.C001_00240', 'T4P_pilM', 7530), ('XAOR001.0321.00001.C001_00241', 'T4P_pilN', 7531), ('XAOR001.0321.00001.C001_00242', 'T4P_pilO', 7532), ('XAOR001.0321.00001.C001_00243', 'T4P_pilP', 7533), ('XAOR001.0321.00001.C001_00244', 'T4P_pilQ', 7534)], [('XAOR001.0321.00001.C001_00601', 'T4P_pilU', 7819), ('XAOR001.0321.00001.C001_00602', 'T4P_pilT', 7820)], [('XAOR001.0321.00001.C001_00872', 'T4P_fimT', 8028), ('XAOR001.0321.00001.C001_00873', 'T4P_pilV', 8029), ('XAOR001.0321.00001.C001_00874', 'T4P_pilW', 8030), ('XAOR001.0321.00001.C001_00876', 'T4P_pilY', 8032), ('XAOR001.0321.00001.C001_00877', 'T4P_pilE', 8033), ('XAOR001.0321.00001.C001_00879', 'T4P_fimT', 8034)]
occ = 1
wholeness = 0.667
loci nb = 3
score = 8.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 0 ()
	- T4P_fimT: 2 (T4P_fimT, T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 1 (T4P_pilU)
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = XAOR001.0321.00001.C001_T4P_876
model = TFF-SF/T4P
replicon = XAOR001.0321.00001.C001
clusters = [('XAOR001.0321.00001.C001_00240', 'T4P_pilM', 7530), ('XAOR001.0321.00001.C001_00241', 'T4P_pilN', 7531), ('XAOR001.0321.00001.C001_00242', 'T4P_pilO', 7532), ('XAOR001.0321.00001.C001_00243', 'T4P_pilP', 7533), ('XAOR001.0321.00001.C001_00244', 'T4P_pilQ', 7534)], [('XAOR001.0321.00001.C001_02929', 'T4P_pilB', 9754), ('XAOR001.0321.00001.C001_02933', 'T4P_pilE', 9758), ('XAOR001.0321.00001.C001_02934', 'T4P_pilC', 9759), ('XAOR001.0321.00001.C001_02935', 'T4P_pilD', 9760)], [('XAOR001.0321.00001.C001_03253', 'T4P_pilA', 10027)]
occ = 1
wholeness = 0.556
loci nb = 2
score = 8.350

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [XAOR001.0321.00001.C001_T2SS_861, XAOR001.0321.00001.C001_T2SS_862])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = XAOR001.0321.00001.C001_T4P_865
model = TFF-SF/T4P
replicon = XAOR001.0321.00001.C001
clusters = [('XAOR001.0321.00001.C001_00240', 'T4P_pilM', 7530), ('XAOR001.0321.00001.C001_00241', 'T4P_pilN', 7531), ('XAOR001.0321.00001.C001_00242', 'T4P_pilO', 7532), ('XAOR001.0321.00001.C001_00243', 'T4P_pilP', 7533), ('XAOR001.0321.00001.C001_00244', 'T4P_pilQ', 7534)], [('XAOR001.0321.00001.C001_02929', 'T4P_pilB', 9754), ('XAOR001.0321.00001.C001_02933', 'T4P_pilE', 9758), ('XAOR001.0321.00001.C001_02934', 'T4P_pilC', 9759), ('XAOR001.0321.00001.C001_02935', 'T4P_pilD', 9760)]
occ = 1
wholeness = 0.500
loci nb = 2
score = 8.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [XAOR001.0321.00001.C001_T2SS_861, XAOR001.0321.00001.C001_T2SS_862])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = XAOR001.0321.00001.C001_T4P_875
model = TFF-SF/T4P
replicon = XAOR001.0321.00001.C001
clusters = [('XAOR001.0321.00001.C001_00240', 'T4P_pilM', 7530), ('XAOR001.0321.00001.C001_00241', 'T4P_pilN', 7531), ('XAOR001.0321.00001.C001_00242', 'T4P_pilO', 7532), ('XAOR001.0321.00001.C001_00243', 'T4P_pilP', 7533), ('XAOR001.0321.00001.C001_00244', 'T4P_pilQ', 7534)], [('XAOR001.0321.00001.C001_00872', 'T4P_fimT', 8028), ('XAOR001.0321.00001.C001_00873', 'T4P_pilV', 8029), ('XAOR001.0321.00001.C001_00874', 'T4P_pilW', 8030), ('XAOR001.0321.00001.C001_00876', 'T4P_pilY', 8032), ('XAOR001.0321.00001.C001_00877', 'T4P_pilE', 8033), ('XAOR001.0321.00001.C001_00879', 'T4P_fimT', 8034)], [('XAOR001.0321.00001.C001_03253', 'T4P_pilA', 10027)]
occ = 1
wholeness = 0.611
loci nb = 2
score = 7.350

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 0 ()
	- T4P_fimT: 2 (T4P_fimT, T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = XAOR001.0321.00001.C001_T4P_864
model = TFF-SF/T4P
replicon = XAOR001.0321.00001.C001
clusters = [('XAOR001.0321.00001.C001_00240', 'T4P_pilM', 7530), ('XAOR001.0321.00001.C001_00241', 'T4P_pilN', 7531), ('XAOR001.0321.00001.C001_00242', 'T4P_pilO', 7532), ('XAOR001.0321.00001.C001_00243', 'T4P_pilP', 7533), ('XAOR001.0321.00001.C001_00244', 'T4P_pilQ', 7534)], [('XAOR001.0321.00001.C001_00872', 'T4P_fimT', 8028), ('XAOR001.0321.00001.C001_00873', 'T4P_pilV', 8029), ('XAOR001.0321.00001.C001_00874', 'T4P_pilW', 8030), ('XAOR001.0321.00001.C001_00876', 'T4P_pilY', 8032), ('XAOR001.0321.00001.C001_00877', 'T4P_pilE', 8033), ('XAOR001.0321.00001.C001_00879', 'T4P_fimT', 8034)]
occ = 1
wholeness = 0.556
loci nb = 2
score = 7.000

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 0 ()
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 0 ()
	- T4P_fimT: 2 (T4P_fimT, T4P_fimT)
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = XAOR001.0321.00001.C001_T4P_874
model = TFF-SF/T4P
replicon = XAOR001.0321.00001.C001
clusters = [('XAOR001.0321.00001.C001_00240', 'T4P_pilM', 7530), ('XAOR001.0321.00001.C001_00241', 'T4P_pilN', 7531), ('XAOR001.0321.00001.C001_00242', 'T4P_pilO', 7532), ('XAOR001.0321.00001.C001_00243', 'T4P_pilP', 7533), ('XAOR001.0321.00001.C001_00244', 'T4P_pilQ', 7534)], [('XAOR001.0321.00001.C001_00601', 'T4P_pilU', 7819), ('XAOR001.0321.00001.C001_00602', 'T4P_pilT', 7820)], [('XAOR001.0321.00001.C001_03253', 'T4P_pilA', 10027)]
occ = 1
wholeness = 0.444
loci nb = 2
score = 5.850

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 1 (T4P_pilU)
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = XAOR001.0321.00001.C001_T4P_863
model = TFF-SF/T4P
replicon = XAOR001.0321.00001.C001
clusters = [('XAOR001.0321.00001.C001_00240', 'T4P_pilM', 7530), ('XAOR001.0321.00001.C001_00241', 'T4P_pilN', 7531), ('XAOR001.0321.00001.C001_00242', 'T4P_pilO', 7532), ('XAOR001.0321.00001.C001_00243', 'T4P_pilP', 7533), ('XAOR001.0321.00001.C001_00244', 'T4P_pilQ', 7534)], [('XAOR001.0321.00001.C001_00601', 'T4P_pilU', 7819), ('XAOR001.0321.00001.C001_00602', 'T4P_pilT', 7820)]
occ = 1
wholeness = 0.389
loci nb = 2
score = 5.500

mandatory genes:
	- T4P_pilE: 0 ()
	- T4P_pilB: 0 ()
	- T4P_pilC: 0 ()
	- T4P_pilO: 1 (T4P_pilO)
	- T4P_pilQ: 1 (T4P_pilQ)
	- T4P_pilN: 1 (T4P_pilN)
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 0 ()

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 1 (T4P_pilM)
	- T4P_pilP: 1 (T4P_pilP)
	- T4P_pilU: 1 (T4P_pilU)
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = XAOR001.0321.00001.C001_T4P_882
model = TFF-SF/T4P
replicon = XAOR001.0321.00001.C001
clusters = [('XAOR001.0321.00001.C001_00601', 'T4P_pilU', 7819), ('XAOR001.0321.00001.C001_00602', 'T4P_pilT', 7820)], [('XAOR001.0321.00001.C001_00872', 'T4P_fimT', 8028), ('XAOR001.0321.00001.C001_00873', 'T4P_pilV', 8029), ('XAOR001.0321.00001.C001_00874', 'T4P_pilW', 8030), ('XAOR001.0321.00001.C001_00876', 'T4P_pilY', 8032), ('XAOR001.0321.00001.C001_00877', 'T4P_pilE', 8033), ('XAOR001.0321.00001.C001_00879', 'T4P_fimT', 8034)], [('XAOR001.0321.00001.C001_02929', 'T4P_pilB', 9754), ('XAOR001.0321.00001.C001_02933', 'T4P_pilE', 9758), ('XAOR001.0321.00001.C001_02934', 'T4P_pilC', 9759), ('XAOR001.0321.00001.C001_02935', 'T4P_pilD', 9760)], [('XAOR001.0321.00001.C001_03253', 'T4P_pilA', 10027)]
occ = 1
wholeness = 0.611
loci nb = 3
score = 7.350

mandatory genes:
	- T4P_pilE: 2 (T4P_pilE, T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 0 ()
	- T4P_pilQ: 0 ()
	- T4P_pilN: 0 ()
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [XAOR001.0321.00001.C001_T2SS_861, XAOR001.0321.00001.C001_T2SS_862])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 0 ()
	- T4P_fimT: 2 (T4P_fimT, T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 1 (T4P_pilU)
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = XAOR001.0321.00001.C001_T4P_871
model = TFF-SF/T4P
replicon = XAOR001.0321.00001.C001
clusters = [('XAOR001.0321.00001.C001_00601', 'T4P_pilU', 7819), ('XAOR001.0321.00001.C001_00602', 'T4P_pilT', 7820)], [('XAOR001.0321.00001.C001_00872', 'T4P_fimT', 8028), ('XAOR001.0321.00001.C001_00873', 'T4P_pilV', 8029), ('XAOR001.0321.00001.C001_00874', 'T4P_pilW', 8030), ('XAOR001.0321.00001.C001_00876', 'T4P_pilY', 8032), ('XAOR001.0321.00001.C001_00877', 'T4P_pilE', 8033), ('XAOR001.0321.00001.C001_00879', 'T4P_fimT', 8034)], [('XAOR001.0321.00001.C001_02929', 'T4P_pilB', 9754), ('XAOR001.0321.00001.C001_02933', 'T4P_pilE', 9758), ('XAOR001.0321.00001.C001_02934', 'T4P_pilC', 9759), ('XAOR001.0321.00001.C001_02935', 'T4P_pilD', 9760)]
occ = 1
wholeness = 0.556
loci nb = 3
score = 7.000

mandatory genes:
	- T4P_pilE: 2 (T4P_pilE, T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 0 ()
	- T4P_pilQ: 0 ()
	- T4P_pilN: 0 ()
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [XAOR001.0321.00001.C001_T2SS_861, XAOR001.0321.00001.C001_T2SS_862])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 0 ()
	- T4P_fimT: 2 (T4P_fimT, T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 1 (T4P_pilU)
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = XAOR001.0321.00001.C001_T4P_877
model = TFF-SF/T4P
replicon = XAOR001.0321.00001.C001
clusters = [('XAOR001.0321.00001.C001_00601', 'T4P_pilU', 7819), ('XAOR001.0321.00001.C001_00602', 'T4P_pilT', 7820)], [('XAOR001.0321.00001.C001_02929', 'T4P_pilB', 9754), ('XAOR001.0321.00001.C001_02933', 'T4P_pilE', 9758), ('XAOR001.0321.00001.C001_02934', 'T4P_pilC', 9759), ('XAOR001.0321.00001.C001_02935', 'T4P_pilD', 9760)], [('XAOR001.0321.00001.C001_03253', 'T4P_pilA', 10027)]
occ = 1
wholeness = 0.389
loci nb = 2
score = 5.850

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 0 ()
	- T4P_pilQ: 0 ()
	- T4P_pilN: 0 ()
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [XAOR001.0321.00001.C001_T2SS_861, XAOR001.0321.00001.C001_T2SS_862])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 1 (T4P_pilU)
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = XAOR001.0321.00001.C001_T4P_866
model = TFF-SF/T4P
replicon = XAOR001.0321.00001.C001
clusters = [('XAOR001.0321.00001.C001_00601', 'T4P_pilU', 7819), ('XAOR001.0321.00001.C001_00602', 'T4P_pilT', 7820)], [('XAOR001.0321.00001.C001_02929', 'T4P_pilB', 9754), ('XAOR001.0321.00001.C001_02933', 'T4P_pilE', 9758), ('XAOR001.0321.00001.C001_02934', 'T4P_pilC', 9759), ('XAOR001.0321.00001.C001_02935', 'T4P_pilD', 9760)]
occ = 1
wholeness = 0.333
loci nb = 2
score = 5.500

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 0 ()
	- T4P_pilQ: 0 ()
	- T4P_pilN: 0 ()
	- T4P_pilT: 1 (T4P_pilT)
	- T4P_pilD: 1 (T4P_pilD [XAOR001.0321.00001.C001_T2SS_861, XAOR001.0321.00001.C001_T2SS_862])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 1 (T4P_pilU)
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = XAOR001.0321.00001.C001_T4P_878
model = TFF-SF/T4P
replicon = XAOR001.0321.00001.C001
clusters = [('XAOR001.0321.00001.C001_00872', 'T4P_fimT', 8028), ('XAOR001.0321.00001.C001_00873', 'T4P_pilV', 8029), ('XAOR001.0321.00001.C001_00874', 'T4P_pilW', 8030), ('XAOR001.0321.00001.C001_00876', 'T4P_pilY', 8032), ('XAOR001.0321.00001.C001_00877', 'T4P_pilE', 8033), ('XAOR001.0321.00001.C001_00879', 'T4P_fimT', 8034)], [('XAOR001.0321.00001.C001_02929', 'T4P_pilB', 9754), ('XAOR001.0321.00001.C001_02933', 'T4P_pilE', 9758), ('XAOR001.0321.00001.C001_02934', 'T4P_pilC', 9759), ('XAOR001.0321.00001.C001_02935', 'T4P_pilD', 9760)], [('XAOR001.0321.00001.C001_03253', 'T4P_pilA', 10027)]
occ = 1
wholeness = 0.500
loci nb = 2
score = 5.850

mandatory genes:
	- T4P_pilE: 2 (T4P_pilE, T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 0 ()
	- T4P_pilQ: 0 ()
	- T4P_pilN: 0 ()
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [XAOR001.0321.00001.C001_T2SS_861, XAOR001.0321.00001.C001_T2SS_862])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 0 ()
	- T4P_fimT: 2 (T4P_fimT, T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = XAOR001.0321.00001.C001_T4P_867
model = TFF-SF/T4P
replicon = XAOR001.0321.00001.C001
clusters = [('XAOR001.0321.00001.C001_00872', 'T4P_fimT', 8028), ('XAOR001.0321.00001.C001_00873', 'T4P_pilV', 8029), ('XAOR001.0321.00001.C001_00874', 'T4P_pilW', 8030), ('XAOR001.0321.00001.C001_00876', 'T4P_pilY', 8032), ('XAOR001.0321.00001.C001_00877', 'T4P_pilE', 8033), ('XAOR001.0321.00001.C001_00879', 'T4P_fimT', 8034)], [('XAOR001.0321.00001.C001_02929', 'T4P_pilB', 9754), ('XAOR001.0321.00001.C001_02933', 'T4P_pilE', 9758), ('XAOR001.0321.00001.C001_02934', 'T4P_pilC', 9759), ('XAOR001.0321.00001.C001_02935', 'T4P_pilD', 9760)]
occ = 1
wholeness = 0.444
loci nb = 2
score = 5.500

mandatory genes:
	- T4P_pilE: 2 (T4P_pilE, T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 0 ()
	- T4P_pilQ: 0 ()
	- T4P_pilN: 0 ()
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [XAOR001.0321.00001.C001_T2SS_861, XAOR001.0321.00001.C001_T2SS_862])

accessory genes:
	- T4P_pilA: 0 ()
	- T4P_pilV: 1 (T4P_pilV)
	- T4P_pilY: 1 (T4P_pilY)
	- T4P_pilW: 1 (T4P_pilW)
	- T4P_pilX: 0 ()
	- T4P_fimT: 2 (T4P_fimT, T4P_fimT)
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = XAOR001.0321.00001.C001_T4P_873
model = TFF-SF/T4P
replicon = XAOR001.0321.00001.C001
clusters = [('XAOR001.0321.00001.C001_02929', 'T4P_pilB', 9754), ('XAOR001.0321.00001.C001_02933', 'T4P_pilE', 9758), ('XAOR001.0321.00001.C001_02934', 'T4P_pilC', 9759), ('XAOR001.0321.00001.C001_02935', 'T4P_pilD', 9760)], [('XAOR001.0321.00001.C001_03253', 'T4P_pilA', 10027)]
occ = 1
wholeness = 0.278
loci nb = 1
score = 4.350

mandatory genes:
	- T4P_pilE: 1 (T4P_pilE)
	- T4P_pilB: 1 (T4P_pilB)
	- T4P_pilC: 1 (T4P_pilC)
	- T4P_pilO: 0 ()
	- T4P_pilQ: 0 ()
	- T4P_pilN: 0 ()
	- T4P_pilT: 0 ()
	- T4P_pilD: 1 (T4P_pilD [XAOR001.0321.00001.C001_T2SS_861, XAOR001.0321.00001.C001_T2SS_862])

accessory genes:
	- T4P_pilA: 1 (T4P_pilA)
	- T4P_pilV: 0 ()
	- T4P_pilY: 0 ()
	- T4P_pilW: 0 ()
	- T4P_pilX: 0 ()
	- T4P_fimT: 0 ()
	- T4P_pilM: 0 ()
	- T4P_pilP: 0 ()
	- T4P_pilU: 0 ()
	- MSH_mshM: 0 ()

neutral genes:

============================================================
system id = XAOR001.0321.00001.C001_T2SS_861
model = TFF-SF/T2SS
replicon = XAOR001.0321.00001.C001
clusters = [('XAOR001.0321.00001.C001_03012', 'T2SS_gspD', 9820), ('XAOR001.0321.00001.C001_03013', 'T2SS_gspN', 9821), ('XAOR001.0321.00001.C001_03014', 'T2SS_gspM', 9822), ('XAOR001.0321.00001.C001_03015', 'T2SS_gspL', 9823), ('XAOR001.0321.00001.C001_03016', 'T2SS_gspK', 9824), ('XAOR001.0321.00001.C001_03017', 'T2SS_gspJ', 9825), ('XAOR001.0321.00001.C001_03018', 'T2SS_gspI', 9826), ('XAOR001.0321.00001.C001_03019', 'T2SS_gspH', 9827), ('XAOR001.0321.00001.C001_03020', 'T2SS_gspG', 9828), ('XAOR001.0321.00001.C001_03021', 'T2SS_gspF', 9829), ('XAOR001.0321.00001.C001_03023', 'T2SS_gspE', 9831)], [('XAOR001.0321.00001.C001_02935', 'T4P_pilD', 9760)]
occ = 1
wholeness = 0.857
loci nb = 1
score = 8.060

mandatory genes:
	- T2SS_gspD: 1 (T2SS_gspD)
	- T2SS_gspE: 1 (T2SS_gspE)
	- T2SS_gspF: 1 (T2SS_gspF)
	- T2SS_gspG: 1 (T2SS_gspG)
	- T2SS_gspC: 0 ()
	- T2SS_gspO: 1 (T4P_pilD [XAOR001.0321.00001.C001_T4P_865, XAOR001.0321.00001.C001_T4P_866, XAOR001.0321.00001.C001_T4P_867, XAOR001.0321.00001.C001_T4P_869, XAOR001.0321.00001.C001_T4P_870, XAOR001.0321.00001.C001_T4P_871, XAOR001.0321.00001.C001_T4P_872, XAOR001.0321.00001.C001_T4P_873, XAOR001.0321.00001.C001_T4P_876, XAOR001.0321.00001.C001_T4P_877, XAOR001.0321.00001.C001_T4P_878, XAOR001.0321.00001.C001_T4P_880, XAOR001.0321.00001.C001_T4P_881, XAOR001.0321.00001.C001_T4P_882, XAOR001.0321.00001.C001_T4P_883])

accessory genes:
	- T2SS_gspM: 1 (T2SS_gspM)
	- T2SS_gspH: 1 (T2SS_gspH)
	- T2SS_gspI: 1 (T2SS_gspI)
	- T2SS_gspJ: 1 (T2SS_gspJ)
	- T2SS_gspK: 1 (T2SS_gspK)
	- T2SS_gspN: 1 (T2SS_gspN)
	- T2SS_gspL: 1 (T2SS_gspL)
	- Tad_tadD: 0 ()

neutral genes:

============================================================
system id = XAOR001.0321.00001.C001_T2SS_859
model = TFF-SF/T2SS
replicon = XAOR001.0321.00001.C001
clusters = [('XAOR001.0321.00001.C001_03012', 'T2SS_gspD', 9820), ('XAOR001.0321.00001.C001_03013', 'T2SS_gspN', 9821), ('XAOR001.0321.00001.C001_03014', 'T2SS_gspM', 9822), ('XAOR001.0321.00001.C001_03015', 'T2SS_gspL', 9823), ('XAOR001.0321.00001.C001_03016', 'T2SS_gspK', 9824), ('XAOR001.0321.00001.C001_03017', 'T2SS_gspJ', 9825), ('XAOR001.0321.00001.C001_03018', 'T2SS_gspI', 9826), ('XAOR001.0321.00001.C001_03019', 'T2SS_gspH', 9827), ('XAOR001.0321.00001.C001_03020', 'T2SS_gspG', 9828), ('XAOR001.0321.00001.C001_03021', 'T2SS_gspF', 9829), ('XAOR001.0321.00001.C001_03023', 'T2SS_gspE', 9831)]
occ = 1
wholeness = 0.786
loci nb = 1
score = 7.500

mandatory genes:
	- T2SS_gspD: 1 (T2SS_gspD)
	- T2SS_gspE: 1 (T2SS_gspE)
	- T2SS_gspF: 1 (T2SS_gspF)
	- T2SS_gspG: 1 (T2SS_gspG)
	- T2SS_gspC: 0 ()
	- T2SS_gspO: 0 ()

accessory genes:
	- T2SS_gspM: 1 (T2SS_gspM)
	- T2SS_gspH: 1 (T2SS_gspH)
	- T2SS_gspI: 1 (T2SS_gspI)
	- T2SS_gspJ: 1 (T2SS_gspJ)
	- T2SS_gspK: 1 (T2SS_gspK)
	- T2SS_gspN: 1 (T2SS_gspN)
	- T2SS_gspL: 1 (T2SS_gspL)
	- Tad_tadD: 0 ()

neutral genes:

============================================================
# WARNING Loner: there is only 1 occurrence(s) of loner 'T4P_pilT' and 6 potential systems [PSAV001.0321.00001.C001_T4P_12, PSAV001.0321.00001.C001_T4P_10, PSAV001.0321.00001.C001_T4P_9, PSAV001.0321.00001.C001_T4P_11, PSAV001.0321.00001.C001_T4P_7, PSAV001.0321.00001.C001_T4P_8]
# WARNING Loner: there is only 1 occurrence(s) of loner 'T4P_pilD' and 445 potential systems [THHY002.0321.00001.C001_T4P_473, THHY002.0321.00001.C001_T4P_672, THHY002.0321.00001.C001_T4P_770, THHY002.0321.00001.C001_T4P_846, THHY002.0321.00001.C001_T4P_439, THHY002.0321.00001.C001_T4P_750, THHY002.0321.00001.C001_T4P_767, THHY002.0321.00001.C001_T4P_844, THHY002.0321.00001.C001_T4P_467, THHY002.0321.00001.C001_T4P_512, THHY002.0321.00001.C001_T4P_543, THHY002.0321.00001.C001_T4P_669, THHY002.0321.00001.C001_T4P_691, THHY002.0321.00001.C001_T4P_747, THHY002.0321.00001.C001_T4P_792, THHY002.0321.00001.C001_T4P_433, THHY002.0321.00001.C001_T4P_463, THHY002.0321.00001.C001_T4P_508, THHY002.0321.00001.C001_T4P_537, THHY002.0321.00001.C001_T4P_666, THHY002.0321.00001.C001_T4P_688, THHY002.0321.00001.C001_T4P_789, THHY002.0321.00001.C001_T4P_801, THHY002.0321.00001.C001_T4P_853, THHY002.0321.00001.C001_T4P_429, THHY002.0321.00001.C001_T4P_502, THHY002.0321.00001.C001_T4P_507, THHY002.0321.00001.C001_T4P_546, THHY002.0321.00001.C001_T4P_547, THHY002.0321.00001.C001_T4P_576, THHY002.0321.00001.C001_T4P_692, THHY002.0321.00001.C001_T4P_733, THHY002.0321.00001.C001_T4P_786, THHY002.0321.00001.C001_T4P_806, THHY002.0321.00001.C001_T4P_807, THHY002.0321.00001.C001_T4P_835, THHY002.0321.00001.C001_T4P_855, THHY002.0321.00001.C001_T4P_412, THHY002.0321.00001.C001_T4P_501, THHY002.0321.00001.C001_T4P_511, THHY002.0321.00001.C001_T4P_531, THHY002.0321.00001.C001_T4P_572, THHY002.0321.00001.C001_T4P_589, THHY002.0321.00001.C001_T4P_653, THHY002.0321.00001.C001_T4P_685, THHY002.0321.00001.C001_T4P_700, THHY002.0321.00001.C001_T4P_718, THHY002.0321.00001.C001_T4P_730, THHY002.0321.00001.C001_T4P_791, THHY002.0321.00001.C001_T4P_803, THHY002.0321.00001.C001_T4P_804, THHY002.0321.00001.C001_T4P_816, THHY002.0321.00001.C001_T4P_833, THHY002.0321.00001.C001_T4P_854, THHY002.0321.00001.C001_T4P_396, THHY002.0321.00001.C001_T4P_413, THHY002.0321.00001.C001_T4P_496, THHY002.0321.00001.C001_T4P_540, THHY002.0321.00001.C001_T4P_542, THHY002.0321.00001.C001_T4P_568, THHY002.0321.00001.C001_T4P_577, THHY002.0321.00001.C001_T4P_596, THHY002.0321.00001.C001_T4P_597, THHY002.0321.00001.C001_T4P_654, THHY002.0321.00001.C001_T4P_690, THHY002.0321.00001.C001_T4P_702, THHY002.0321.00001.C001_T4P_715, THHY002.0321.00001.C001_T4P_729, THHY002.0321.00001.C001_T4P_753, THHY002.0321.00001.C001_T4P_788, THHY002.0321.00001.C001_T4P_818, THHY002.0321.00001.C001_T4P_832, THHY002.0321.00001.C001_T4P_397, THHY002.0321.00001.C001_T4P_409, THHY002.0321.00001.C001_T4P_437, THHY002.0321.00001.C001_T4P_466, THHY002.0321.00001.C001_T4P_505, THHY002.0321.00001.C001_T4P_534, THHY002.0321.00001.C001_T4P_536, THHY002.0321.00001.C001_T4P_567, THHY002.0321.00001.C001_T4P_575, THHY002.0321.00001.C001_T4P_592, THHY002.0321.00001.C001_T4P_593, THHY002.0321.00001.C001_T4P_608, THHY002.0321.00001.C001_T4P_651, THHY002.0321.00001.C001_T4P_668, THHY002.0321.00001.C001_T4P_687, THHY002.0321.00001.C001_T4P_701, THHY002.0321.00001.C001_T4P_714, THHY002.0321.00001.C001_T4P_749, THHY002.0321.00001.C001_T4P_817, THHY002.0321.00001.C001_T4P_821, THHY002.0321.00001.C001_T4P_822, THHY002.0321.00001.C001_T4P_857, THHY002.0321.00001.C001_T4P_393, THHY002.0321.00001.C001_T4P_408, THHY002.0321.00001.C001_T4P_432, THHY002.0321.00001.C001_T4P_438, THHY002.0321.00001.C001_T4P_462, THHY002.0321.00001.C001_T4P_499, THHY002.0321.00001.C001_T4P_571, THHY002.0321.00001.C001_T4P_574, THHY002.0321.00001.C001_T4P_598, THHY002.0321.00001.C001_T4P_610, THHY002.0321.00001.C001_T4P_650, THHY002.0321.00001.C001_T4P_665, THHY002.0321.00001.C001_T4P_746, THHY002.0321.00001.C001_T4P_764, THHY002.0321.00001.C001_T4P_772, THHY002.0321.00001.C001_T4P_773, THHY002.0321.00001.C001_T4P_815, THHY002.0321.00001.C001_T4P_824, THHY002.0321.00001.C001_T4P_842, THHY002.0321.00001.C001_T4P_847, THHY002.0321.00001.C001_T4P_392, THHY002.0321.00001.C001_T4P_428, THHY002.0321.00001.C001_T4P_431, THHY002.0321.00001.C001_T4P_469, THHY002.0321.00001.C001_T4P_471, THHY002.0321.00001.C001_T4P_506, THHY002.0321.00001.C001_T4P_570, THHY002.0321.00001.C001_T4P_586, THHY002.0321.00001.C001_T4P_588, THHY002.0321.00001.C001_T4P_609, THHY002.0321.00001.C001_T4P_614, THHY002.0321.00001.C001_T4P_615, THHY002.0321.00001.C001_T4P_670, THHY002.0321.00001.C001_T4P_699, THHY002.0321.00001.C001_T4P_704, THHY002.0321.00001.C001_T4P_709, THHY002.0321.00001.C001_T4P_744, THHY002.0321.00001.C001_T4P_752, THHY002.0321.00001.C001_T4P_768, THHY002.0321.00001.C001_T4P_769, THHY002.0321.00001.C001_T4P_823, THHY002.0321.00001.C001_T4P_826, THHY002.0321.00001.C001_T4P_828, THHY002.0321.00001.C001_T4P_845, THHY002.0321.00001.C001_T4P_427, THHY002.0321.00001.C001_T4P_435, THHY002.0321.00001.C001_T4P_459, THHY002.0321.00001.C001_T4P_470, THHY002.0321.00001.C001_T4P_472, THHY002.0321.00001.C001_T4P_500, THHY002.0321.00001.C001_T4P_530, THHY002.0321.00001.C001_T4P_565, THHY002.0321.00001.C001_T4P_595, THHY002.0321.00001.C001_T4P_607, THHY002.0321.00001.C001_T4P_617, THHY002.0321.00001.C001_T4P_663, THHY002.0321.00001.C001_T4P_671, THHY002.0321.00001.C001_T4P_684, THHY002.0321.00001.C001_T4P_705, THHY002.0321.00001.C001_T4P_748, THHY002.0321.00001.C001_T4P_765, THHY002.0321.00001.C001_T4P_766, THHY002.0321.00001.C001_T4P_785, THHY002.0321.00001.C001_T4P_793, THHY002.0321.00001.C001_T4P_843, THHY002.0321.00001.C001_T4P_389, THHY002.0321.00001.C001_T4P_425, THHY002.0321.00001.C001_T4P_436, THHY002.0321.00001.C001_T4P_464, THHY002.0321.00001.C001_T4P_465, THHY002.0321.00001.C001_T4P_495, THHY002.0321.00001.C001_T4P_509, THHY002.0321.00001.C001_T4P_539, THHY002.0321.00001.C001_T4P_541, THHY002.0321.00001.C001_T4P_591, THHY002.0321.00001.C001_T4P_606, THHY002.0321.00001.C001_T4P_616, THHY002.0321.00001.C001_T4P_619, THHY002.0321.00001.C001_T4P_647, THHY002.0321.00001.C001_T4P_667, THHY002.0321.00001.C001_T4P_689, THHY002.0321.00001.C001_T4P_717, THHY002.0321.00001.C001_T4P_745, THHY002.0321.00001.C001_T4P_790, THHY002.0321.00001.C001_T4P_827, THHY002.0321.00001.C001_T4P_387, THHY002.0321.00001.C001_T4P_430, THHY002.0321.00001.C001_T4P_460, THHY002.0321.00001.C001_T4P_461, THHY002.0321.00001.C001_T4P_494, THHY002.0321.00001.C001_T4P_504, THHY002.0321.00001.C001_T4P_510, THHY002.0321.00001.C001_T4P_533, THHY002.0321.00001.C001_T4P_535, THHY002.0321.00001.C001_T4P_566, THHY002.0321.00001.C001_T4P_664, THHY002.0321.00001.C001_T4P_686, THHY002.0321.00001.C001_T4P_787, THHY002.0321.00001.C001_T4P_799, THHY002.0321.00001.C001_T4P_800, THHY002.0321.00001.C001_T4P_808, THHY002.0321.00001.C001_T4P_852, THHY002.0321.00001.C001_T4P_395, THHY002.0321.00001.C001_T4P_426, THHY002.0321.00001.C001_T4P_498, THHY002.0321.00001.C001_T4P_503, THHY002.0321.00001.C001_T4P_544, THHY002.0321.00001.C001_T4P_573, THHY002.0321.00001.C001_T4P_613, THHY002.0321.00001.C001_T4P_620, THHY002.0321.00001.C001_T4P_731, THHY002.0321.00001.C001_T4P_732, THHY002.0321.00001.C001_T4P_784, THHY002.0321.00001.C001_T4P_805, THHY002.0321.00001.C001_T4P_834, THHY002.0321.00001.C001_T4P_497, THHY002.0321.00001.C001_T4P_528, THHY002.0321.00001.C001_T4P_529, THHY002.0321.00001.C001_T4P_545, THHY002.0321.00001.C001_T4P_569, THHY002.0321.00001.C001_T4P_585, THHY002.0321.00001.C001_T4P_587, THHY002.0321.00001.C001_T4P_683, THHY002.0321.00001.C001_T4P_698, THHY002.0321.00001.C001_T4P_716, THHY002.0321.00001.C001_T4P_802, THHY002.0321.00001.C001_T4P_814, THHY002.0321.00001.C001_T4P_410, THHY002.0321.00001.C001_T4P_411, THHY002.0321.00001.C001_T4P_493, THHY002.0321.00001.C001_T4P_538, THHY002.0321.00001.C001_T4P_564, THHY002.0321.00001.C001_T4P_594, THHY002.0321.00001.C001_T4P_652, THHY002.0321.00001.C001_T4P_751, THHY002.0321.00001.C001_T4P_394, THHY002.0321.00001.C001_T4P_532, THHY002.0321.00001.C001_T4P_563, THHY002.0321.00001.C001_T4P_590, THHY002.0321.00001.C001_T4P_605, THHY002.0321.00001.C001_T4P_820, THHY002.0321.00001.C001_T4P_434, THHY002.0321.00001.C001_T4P_771, THHY002.0321.00001.C001_T4P_584, THHY002.0321.00001.C001_T4P_612, THHY002.0321.00001.C001_T4P_468, THHY002.0321.00001.C001_T4P_737, THHY002.0321.00001.C001_T4P_838, THHY002.0321.00001.C001_T4P_722, THHY002.0321.00001.C001_T4P_778, THHY002.0321.00001.C001_T4P_850, THHY002.0321.00001.C001_T4P_418, THHY002.0321.00001.C001_T4P_483, THHY002.0321.00001.C001_T4P_658, THHY002.0321.00001.C001_T4P_678, THHY002.0321.00001.C001_T4P_758, THHY002.0321.00001.C001_T4P_759, THHY002.0321.00001.C001_T4P_776, THHY002.0321.00001.C001_T4P_849, THHY002.0321.00001.C001_T4P_402, THHY002.0321.00001.C001_T4P_449, THHY002.0321.00001.C001_T4P_480, THHY002.0321.00001.C001_T4P_556, THHY002.0321.00001.C001_T4P_677, THHY002.0321.00001.C001_T4P_696, THHY002.0321.00001.C001_T4P_756, THHY002.0321.00001.C001_T4P_797, THHY002.0321.00001.C001_T4P_810, THHY002.0321.00001.C001_T4P_856, THHY002.0321.00001.C001_T4P_446, THHY002.0321.00001.C001_T4P_448, THHY002.0321.00001.C001_T4P_477, THHY002.0321.00001.C001_T4P_521, THHY002.0321.00001.C001_T4P_522, THHY002.0321.00001.C001_T4P_553, THHY002.0321.00001.C001_T4P_675, THHY002.0321.00001.C001_T4P_695, THHY002.0321.00001.C001_T4P_779, THHY002.0321.00001.C001_T4P_795, THHY002.0321.00001.C001_T4P_796, THHY002.0321.00001.C001_T4P_443, THHY002.0321.00001.C001_T4P_518, THHY002.0321.00001.C001_T4P_520, THHY002.0321.00001.C001_T4P_550, THHY002.0321.00001.C001_T4P_582, THHY002.0321.00001.C001_T4P_601, THHY002.0321.00001.C001_T4P_694, THHY002.0321.00001.C001_T4P_703, THHY002.0321.00001.C001_T4P_710, THHY002.0321.00001.C001_T4P_812, THHY002.0321.00001.C001_T4P_819, THHY002.0321.00001.C001_T4P_829, THHY002.0321.00001.C001_T4P_482, THHY002.0321.00001.C001_T4P_515, THHY002.0321.00001.C001_T4P_517, THHY002.0321.00001.C001_T4P_557, THHY002.0321.00001.C001_T4P_580, THHY002.0321.00001.C001_T4P_581, THHY002.0321.00001.C001_T4P_706, THHY002.0321.00001.C001_T4P_735, THHY002.0321.00001.C001_T4P_811, THHY002.0321.00001.C001_T4P_837, THHY002.0321.00001.C001_T4P_390, THHY002.0321.00001.C001_T4P_417, THHY002.0321.00001.C001_T4P_555, THHY002.0321.00001.C001_T4P_579, THHY002.0321.00001.C001_T4P_603, THHY002.0321.00001.C001_T4P_611, THHY002.0321.00001.C001_T4P_648, THHY002.0321.00001.C001_T4P_657, THHY002.0321.00001.C001_T4P_720, THHY002.0321.00001.C001_T4P_721, THHY002.0321.00001.C001_T4P_734, THHY002.0321.00001.C001_T4P_825, THHY002.0321.00001.C001_T4P_836, THHY002.0321.00001.C001_T4P_388, THHY002.0321.00001.C001_T4P_401, THHY002.0321.00001.C001_T4P_415, THHY002.0321.00001.C001_T4P_479, THHY002.0321.00001.C001_T4P_552, THHY002.0321.00001.C001_T4P_602, THHY002.0321.00001.C001_T4P_656, THHY002.0321.00001.C001_T4P_676, THHY002.0321.00001.C001_T4P_719, THHY002.0321.00001.C001_T4P_757, THHY002.0321.00001.C001_T4P_774, THHY002.0321.00001.C001_T4P_848, THHY002.0321.00001.C001_T4P_399, THHY002.0321.00001.C001_T4P_400, THHY002.0321.00001.C001_T4P_414, THHY002.0321.00001.C001_T4P_445, THHY002.0321.00001.C001_T4P_447, THHY002.0321.00001.C001_T4P_476, THHY002.0321.00001.C001_T4P_600, THHY002.0321.00001.C001_T4P_618, THHY002.0321.00001.C001_T4P_655, THHY002.0321.00001.C001_T4P_674, THHY002.0321.00001.C001_T4P_736, THHY002.0321.00001.C001_T4P_754, THHY002.0321.00001.C001_T4P_755, THHY002.0321.00001.C001_T4P_398, THHY002.0321.00001.C001_T4P_442, THHY002.0321.00001.C001_T4P_444, THHY002.0321.00001.C001_T4P_474, THHY002.0321.00001.C001_T4P_519, THHY002.0321.00001.C001_T4P_549, THHY002.0321.00001.C001_T4P_673, THHY002.0321.00001.C001_T4P_693, THHY002.0321.00001.C001_T4P_777, THHY002.0321.00001.C001_T4P_794, THHY002.0321.00001.C001_T4P_416, THHY002.0321.00001.C001_T4P_440, THHY002.0321.00001.C001_T4P_441, THHY002.0321.00001.C001_T4P_481, THHY002.0321.00001.C001_T4P_514, THHY002.0321.00001.C001_T4P_516, THHY002.0321.00001.C001_T4P_775, THHY002.0321.00001.C001_T4P_478, THHY002.0321.00001.C001_T4P_513, THHY002.0321.00001.C001_T4P_554, THHY002.0321.00001.C001_T4P_578, THHY002.0321.00001.C001_T4P_809, THHY002.0321.00001.C001_T4P_475, THHY002.0321.00001.C001_T4P_551, THHY002.0321.00001.C001_T4P_548, THHY002.0321.00001.C001_T4P_599, THHY002.0321.00001.C001_T4P_781, THHY002.0321.00001.C001_T4P_851, THHY002.0321.00001.C001_T4P_761, THHY002.0321.00001.C001_T4P_762, THHY002.0321.00001.C001_T4P_486, THHY002.0321.00001.C001_T4P_560, THHY002.0321.00001.C001_T4P_680, THHY002.0321.00001.C001_T4P_697, THHY002.0321.00001.C001_T4P_798, THHY002.0321.00001.C001_T4P_452, THHY002.0321.00001.C001_T4P_454, THHY002.0321.00001.C001_T4P_525, THHY002.0321.00001.C001_T4P_526, THHY002.0321.00001.C001_T4P_782, THHY002.0321.00001.C001_T4P_524, THHY002.0321.00001.C001_T4P_583, THHY002.0321.00001.C001_T4P_813, THHY002.0321.00001.C001_T4P_488, THHY002.0321.00001.C001_T4P_561, THHY002.0321.00001.C001_T4P_738, THHY002.0321.00001.C001_T4P_740, THHY002.0321.00001.C001_T4P_839, THHY002.0321.00001.C001_T4P_840, THHY002.0321.00001.C001_T4P_559, THHY002.0321.00001.C001_T4P_604, THHY002.0321.00001.C001_T4P_723, THHY002.0321.00001.C001_T4P_724, THHY002.0321.00001.C001_T4P_725, THHY002.0321.00001.C001_T4P_419, THHY002.0321.00001.C001_T4P_485, THHY002.0321.00001.C001_T4P_489, THHY002.0321.00001.C001_T4P_659, THHY002.0321.00001.C001_T4P_679, THHY002.0321.00001.C001_T4P_681, THHY002.0321.00001.C001_T4P_760, THHY002.0321.00001.C001_T4P_403, THHY002.0321.00001.C001_T4P_404, THHY002.0321.00001.C001_T4P_451, THHY002.0321.00001.C001_T4P_453, THHY002.0321.00001.C001_T4P_455, THHY002.0321.00001.C001_T4P_739, THHY002.0321.00001.C001_T4P_450, THHY002.0321.00001.C001_T4P_523, THHY002.0321.00001.C001_T4P_780, THHY002.0321.00001.C001_T4P_420, THHY002.0321.00001.C001_T4P_487, THHY002.0321.00001.C001_T4P_711, THHY002.0321.00001.C001_T4P_830, THHY002.0321.00001.C001_T4P_484, THHY002.0321.00001.C001_T4P_558, THHY002.0321.00001.C001_T4P_421, THHY002.0321.00001.C001_T4P_660, THHY002.0321.00001.C001_T4P_491, THHY002.0321.00001.C001_T4P_682, THHY002.0321.00001.C001_T4P_457, THHY002.0321.00001.C001_T4P_527, THHY002.0321.00001.C001_T4P_562, THHY002.0321.00001.C001_T4P_742, THHY002.0321.00001.C001_T4P_841, THHY002.0321.00001.C001_T4P_422, THHY002.0321.00001.C001_T4P_661, THHY002.0321.00001.C001_T4P_727, THHY002.0321.00001.C001_T4P_405, THHY002.0321.00001.C001_T4P_763, THHY002.0321.00001.C001_T4P_456, THHY002.0321.00001.C001_T4P_783, THHY002.0321.00001.C001_T4P_490, THHY002.0321.00001.C001_T4P_712, THHY002.0321.00001.C001_T4P_831, THHY002.0321.00001.C001_T4P_707, THHY002.0321.00001.C001_T4P_726, THHY002.0321.00001.C001_T4P_741, THHY002.0321.00001.C001_T4P_458, THHY002.0321.00001.C001_T4P_492, THHY002.0321.00001.C001_T4P_728, THHY002.0321.00001.C001_T4P_406, THHY002.0321.00001.C001_T4P_743, THHY002.0321.00001.C001_T4P_423, THHY002.0321.00001.C001_T4P_708, THHY002.0321.00001.C001_T4P_713, THHY002.0321.00001.C001_T4P_424, THHY002.0321.00001.C001_T4P_662, THHY002.0321.00001.C001_T4P_407, THHY002.0321.00001.C001_T4P_391, THHY002.0321.00001.C001_T4P_649]
# WARNING Loner: there is only 1 occurrence(s) of loner 'T4P_pilA' and 164 potential systems [THHY002.0321.00001.C001_T4P_672, THHY002.0321.00001.C001_T4P_846, THHY002.0321.00001.C001_T4P_247, THHY002.0321.00001.C001_T4P_844, THHY002.0321.00001.C001_T4P_635, THHY002.0321.00001.C001_T4P_669, THHY002.0321.00001.C001_T4P_691, THHY002.0321.00001.C001_T4P_633, THHY002.0321.00001.C001_T4P_666, THHY002.0321.00001.C001_T4P_688, THHY002.0321.00001.C001_T4P_245, THHY002.0321.00001.C001_T4P_265, THHY002.0321.00001.C001_T4P_853, THHY002.0321.00001.C001_T4P_692, THHY002.0321.00001.C001_T4P_242, THHY002.0321.00001.C001_T4P_262, THHY002.0321.00001.C001_T4P_835, THHY002.0321.00001.C001_T4P_855, THHY002.0321.00001.C001_T4P_642, THHY002.0321.00001.C001_T4P_653, THHY002.0321.00001.C001_T4P_685, THHY002.0321.00001.C001_T4P_700, THHY002.0321.00001.C001_T4P_266, THHY002.0321.00001.C001_T4P_833, THHY002.0321.00001.C001_T4P_854, THHY002.0321.00001.C001_T4P_626, THHY002.0321.00001.C001_T4P_644, THHY002.0321.00001.C001_T4P_654, THHY002.0321.00001.C001_T4P_690, THHY002.0321.00001.C001_T4P_702, THHY002.0321.00001.C001_T4P_232, THHY002.0321.00001.C001_T4P_259, THHY002.0321.00001.C001_T4P_274, THHY002.0321.00001.C001_T4P_832, THHY002.0321.00001.C001_T4P_624, THHY002.0321.00001.C001_T4P_643, THHY002.0321.00001.C001_T4P_651, THHY002.0321.00001.C001_T4P_668, THHY002.0321.00001.C001_T4P_687, THHY002.0321.00001.C001_T4P_701, THHY002.0321.00001.C001_T4P_264, THHY002.0321.00001.C001_T4P_276, THHY002.0321.00001.C001_T4P_857, THHY002.0321.00001.C001_T4P_623, THHY002.0321.00001.C001_T4P_650, THHY002.0321.00001.C001_T4P_665, THHY002.0321.00001.C001_T4P_231, THHY002.0321.00001.C001_T4P_244, THHY002.0321.00001.C001_T4P_261, THHY002.0321.00001.C001_T4P_275, THHY002.0321.00001.C001_T4P_842, THHY002.0321.00001.C001_T4P_847, THHY002.0321.00001.C001_T4P_646, THHY002.0321.00001.C001_T4P_670, THHY002.0321.00001.C001_T4P_699, THHY002.0321.00001.C001_T4P_704, THHY002.0321.00001.C001_T4P_230, THHY002.0321.00001.C001_T4P_241, THHY002.0321.00001.C001_T4P_828, THHY002.0321.00001.C001_T4P_845, THHY002.0321.00001.C001_T4P_631, THHY002.0321.00001.C001_T4P_636, THHY002.0321.00001.C001_T4P_663, THHY002.0321.00001.C001_T4P_671, THHY002.0321.00001.C001_T4P_684, THHY002.0321.00001.C001_T4P_246, THHY002.0321.00001.C001_T4P_273, THHY002.0321.00001.C001_T4P_278, THHY002.0321.00001.C001_T4P_843, THHY002.0321.00001.C001_T4P_621, THHY002.0321.00001.C001_T4P_634, THHY002.0321.00001.C001_T4P_647, THHY002.0321.00001.C001_T4P_667, THHY002.0321.00001.C001_T4P_689, THHY002.0321.00001.C001_T4P_239, THHY002.0321.00001.C001_T4P_258, THHY002.0321.00001.C001_T4P_632, THHY002.0321.00001.C001_T4P_664, THHY002.0321.00001.C001_T4P_686, THHY002.0321.00001.C001_T4P_243, THHY002.0321.00001.C001_T4P_263, THHY002.0321.00001.C001_T4P_852, THHY002.0321.00001.C001_T4P_240, THHY002.0321.00001.C001_T4P_260, THHY002.0321.00001.C001_T4P_834, THHY002.0321.00001.C001_T4P_641, THHY002.0321.00001.C001_T4P_683, THHY002.0321.00001.C001_T4P_698, THHY002.0321.00001.C001_T4P_625, THHY002.0321.00001.C001_T4P_652, THHY002.0321.00001.C001_T4P_257, THHY002.0321.00001.C001_T4P_272, THHY002.0321.00001.C001_T4P_838, THHY002.0321.00001.C001_T4P_850, THHY002.0321.00001.C001_T4P_629, THHY002.0321.00001.C001_T4P_658, THHY002.0321.00001.C001_T4P_678, THHY002.0321.00001.C001_T4P_849, THHY002.0321.00001.C001_T4P_639, THHY002.0321.00001.C001_T4P_677, THHY002.0321.00001.C001_T4P_696, THHY002.0321.00001.C001_T4P_236, THHY002.0321.00001.C001_T4P_253, THHY002.0321.00001.C001_T4P_856, THHY002.0321.00001.C001_T4P_638, THHY002.0321.00001.C001_T4P_675, THHY002.0321.00001.C001_T4P_695, THHY002.0321.00001.C001_T4P_252, THHY002.0321.00001.C001_T4P_270, THHY002.0321.00001.C001_T4P_645, THHY002.0321.00001.C001_T4P_694, THHY002.0321.00001.C001_T4P_703, THHY002.0321.00001.C001_T4P_250, THHY002.0321.00001.C001_T4P_269, THHY002.0321.00001.C001_T4P_829, THHY002.0321.00001.C001_T4P_268, THHY002.0321.00001.C001_T4P_277, THHY002.0321.00001.C001_T4P_837, THHY002.0321.00001.C001_T4P_622, THHY002.0321.00001.C001_T4P_648, THHY002.0321.00001.C001_T4P_657, THHY002.0321.00001.C001_T4P_836, THHY002.0321.00001.C001_T4P_628, THHY002.0321.00001.C001_T4P_656, THHY002.0321.00001.C001_T4P_676, THHY002.0321.00001.C001_T4P_229, THHY002.0321.00001.C001_T4P_235, THHY002.0321.00001.C001_T4P_848, THHY002.0321.00001.C001_T4P_627, THHY002.0321.00001.C001_T4P_655, THHY002.0321.00001.C001_T4P_674, THHY002.0321.00001.C001_T4P_234, THHY002.0321.00001.C001_T4P_251, THHY002.0321.00001.C001_T4P_637, THHY002.0321.00001.C001_T4P_673, THHY002.0321.00001.C001_T4P_693, THHY002.0321.00001.C001_T4P_233, THHY002.0321.00001.C001_T4P_249, THHY002.0321.00001.C001_T4P_248, THHY002.0321.00001.C001_T4P_267, THHY002.0321.00001.C001_T4P_851, THHY002.0321.00001.C001_T4P_640, THHY002.0321.00001.C001_T4P_680, THHY002.0321.00001.C001_T4P_697, THHY002.0321.00001.C001_T4P_255, THHY002.0321.00001.C001_T4P_271, THHY002.0321.00001.C001_T4P_839, THHY002.0321.00001.C001_T4P_840, THHY002.0321.00001.C001_T4P_630, THHY002.0321.00001.C001_T4P_659, THHY002.0321.00001.C001_T4P_679, THHY002.0321.00001.C001_T4P_681, THHY002.0321.00001.C001_T4P_237, THHY002.0321.00001.C001_T4P_254, THHY002.0321.00001.C001_T4P_830, THHY002.0321.00001.C001_T4P_660, THHY002.0321.00001.C001_T4P_682, THHY002.0321.00001.C001_T4P_256, THHY002.0321.00001.C001_T4P_841, THHY002.0321.00001.C001_T4P_661, THHY002.0321.00001.C001_T4P_238, THHY002.0321.00001.C001_T4P_831, THHY002.0321.00001.C001_T4P_662, THHY002.0321.00001.C001_T4P_649]
# WARNING Loner: there is only 1 occurrence(s) of loner 'T4P_pilT' and 287 potential systems [THHY002.0321.00001.C001_T4P_770, THHY002.0321.00001.C001_T4P_846, THHY002.0321.00001.C001_T4P_750, THHY002.0321.00001.C001_T4P_767, THHY002.0321.00001.C001_T4P_844, THHY002.0321.00001.C001_T4P_330, THHY002.0321.00001.C001_T4P_635, THHY002.0321.00001.C001_T4P_747, THHY002.0321.00001.C001_T4P_792, THHY002.0321.00001.C001_T4P_311, THHY002.0321.00001.C001_T4P_327, THHY002.0321.00001.C001_T4P_633, THHY002.0321.00001.C001_T4P_789, THHY002.0321.00001.C001_T4P_801, THHY002.0321.00001.C001_T4P_853, THHY002.0321.00001.C001_T4P_308, THHY002.0321.00001.C001_T4P_351, THHY002.0321.00001.C001_T4P_733, THHY002.0321.00001.C001_T4P_786, THHY002.0321.00001.C001_T4P_806, THHY002.0321.00001.C001_T4P_807, THHY002.0321.00001.C001_T4P_835, THHY002.0321.00001.C001_T4P_855, THHY002.0321.00001.C001_T4P_348, THHY002.0321.00001.C001_T4P_360, THHY002.0321.00001.C001_T4P_642, THHY002.0321.00001.C001_T4P_718, THHY002.0321.00001.C001_T4P_730, THHY002.0321.00001.C001_T4P_791, THHY002.0321.00001.C001_T4P_803, THHY002.0321.00001.C001_T4P_804, THHY002.0321.00001.C001_T4P_816, THHY002.0321.00001.C001_T4P_833, THHY002.0321.00001.C001_T4P_854, THHY002.0321.00001.C001_T4P_298, THHY002.0321.00001.C001_T4P_345, THHY002.0321.00001.C001_T4P_365, THHY002.0321.00001.C001_T4P_366, THHY002.0321.00001.C001_T4P_626, THHY002.0321.00001.C001_T4P_644, THHY002.0321.00001.C001_T4P_715, THHY002.0321.00001.C001_T4P_729, THHY002.0321.00001.C001_T4P_753, THHY002.0321.00001.C001_T4P_788, THHY002.0321.00001.C001_T4P_818, THHY002.0321.00001.C001_T4P_832, THHY002.0321.00001.C001_T4P_287, THHY002.0321.00001.C001_T4P_295, THHY002.0321.00001.C001_T4P_350, THHY002.0321.00001.C001_T4P_362, THHY002.0321.00001.C001_T4P_363, THHY002.0321.00001.C001_T4P_375, THHY002.0321.00001.C001_T4P_624, THHY002.0321.00001.C001_T4P_643, THHY002.0321.00001.C001_T4P_714, THHY002.0321.00001.C001_T4P_749, THHY002.0321.00001.C001_T4P_817, THHY002.0321.00001.C001_T4P_821, THHY002.0321.00001.C001_T4P_822, THHY002.0321.00001.C001_T4P_857, THHY002.0321.00001.C001_T4P_284, THHY002.0321.00001.C001_T4P_294, THHY002.0321.00001.C001_T4P_314, THHY002.0321.00001.C001_T4P_347, THHY002.0321.00001.C001_T4P_377, THHY002.0321.00001.C001_T4P_623, THHY002.0321.00001.C001_T4P_746, THHY002.0321.00001.C001_T4P_764, THHY002.0321.00001.C001_T4P_772, THHY002.0321.00001.C001_T4P_773, THHY002.0321.00001.C001_T4P_815, THHY002.0321.00001.C001_T4P_824, THHY002.0321.00001.C001_T4P_842, THHY002.0321.00001.C001_T4P_847, THHY002.0321.00001.C001_T4P_283, THHY002.0321.00001.C001_T4P_310, THHY002.0321.00001.C001_T4P_376, THHY002.0321.00001.C001_T4P_380, THHY002.0321.00001.C001_T4P_381, THHY002.0321.00001.C001_T4P_646, THHY002.0321.00001.C001_T4P_709, THHY002.0321.00001.C001_T4P_744, THHY002.0321.00001.C001_T4P_752, THHY002.0321.00001.C001_T4P_768, THHY002.0321.00001.C001_T4P_769, THHY002.0321.00001.C001_T4P_823, THHY002.0321.00001.C001_T4P_826, THHY002.0321.00001.C001_T4P_828, THHY002.0321.00001.C001_T4P_845, THHY002.0321.00001.C001_T4P_307, THHY002.0321.00001.C001_T4P_324, THHY002.0321.00001.C001_T4P_332, THHY002.0321.00001.C001_T4P_333, THHY002.0321.00001.C001_T4P_374, THHY002.0321.00001.C001_T4P_383, THHY002.0321.00001.C001_T4P_631, THHY002.0321.00001.C001_T4P_636, THHY002.0321.00001.C001_T4P_705, THHY002.0321.00001.C001_T4P_748, THHY002.0321.00001.C001_T4P_765, THHY002.0321.00001.C001_T4P_766, THHY002.0321.00001.C001_T4P_785, THHY002.0321.00001.C001_T4P_793, THHY002.0321.00001.C001_T4P_843, THHY002.0321.00001.C001_T4P_281, THHY002.0321.00001.C001_T4P_305, THHY002.0321.00001.C001_T4P_313, THHY002.0321.00001.C001_T4P_328, THHY002.0321.00001.C001_T4P_329, THHY002.0321.00001.C001_T4P_382, THHY002.0321.00001.C001_T4P_385, THHY002.0321.00001.C001_T4P_621, THHY002.0321.00001.C001_T4P_634, THHY002.0321.00001.C001_T4P_717, THHY002.0321.00001.C001_T4P_745, THHY002.0321.00001.C001_T4P_790, THHY002.0321.00001.C001_T4P_827, THHY002.0321.00001.C001_T4P_279, THHY002.0321.00001.C001_T4P_309, THHY002.0321.00001.C001_T4P_325, THHY002.0321.00001.C001_T4P_326, THHY002.0321.00001.C001_T4P_344, THHY002.0321.00001.C001_T4P_352, THHY002.0321.00001.C001_T4P_632, THHY002.0321.00001.C001_T4P_787, THHY002.0321.00001.C001_T4P_799, THHY002.0321.00001.C001_T4P_800, THHY002.0321.00001.C001_T4P_808, THHY002.0321.00001.C001_T4P_852, THHY002.0321.00001.C001_T4P_286, THHY002.0321.00001.C001_T4P_306, THHY002.0321.00001.C001_T4P_349, THHY002.0321.00001.C001_T4P_386, THHY002.0321.00001.C001_T4P_731, THHY002.0321.00001.C001_T4P_732, THHY002.0321.00001.C001_T4P_784, THHY002.0321.00001.C001_T4P_805, THHY002.0321.00001.C001_T4P_834, THHY002.0321.00001.C001_T4P_346, THHY002.0321.00001.C001_T4P_358, THHY002.0321.00001.C001_T4P_359, THHY002.0321.00001.C001_T4P_367, THHY002.0321.00001.C001_T4P_641, THHY002.0321.00001.C001_T4P_716, THHY002.0321.00001.C001_T4P_802, THHY002.0321.00001.C001_T4P_814, THHY002.0321.00001.C001_T4P_296, THHY002.0321.00001.C001_T4P_297, THHY002.0321.00001.C001_T4P_343, THHY002.0321.00001.C001_T4P_364, THHY002.0321.00001.C001_T4P_625, THHY002.0321.00001.C001_T4P_751, THHY002.0321.00001.C001_T4P_285, THHY002.0321.00001.C001_T4P_361, THHY002.0321.00001.C001_T4P_373, THHY002.0321.00001.C001_T4P_820, THHY002.0321.00001.C001_T4P_312, THHY002.0321.00001.C001_T4P_771, THHY002.0321.00001.C001_T4P_379, THHY002.0321.00001.C001_T4P_331, THHY002.0321.00001.C001_T4P_737, THHY002.0321.00001.C001_T4P_838, THHY002.0321.00001.C001_T4P_722, THHY002.0321.00001.C001_T4P_778, THHY002.0321.00001.C001_T4P_850, THHY002.0321.00001.C001_T4P_302, THHY002.0321.00001.C001_T4P_629, THHY002.0321.00001.C001_T4P_758, THHY002.0321.00001.C001_T4P_759, THHY002.0321.00001.C001_T4P_776, THHY002.0321.00001.C001_T4P_849, THHY002.0321.00001.C001_T4P_291, THHY002.0321.00001.C001_T4P_338, THHY002.0321.00001.C001_T4P_639, THHY002.0321.00001.C001_T4P_756, THHY002.0321.00001.C001_T4P_797, THHY002.0321.00001.C001_T4P_810, THHY002.0321.00001.C001_T4P_856, THHY002.0321.00001.C001_T4P_319, THHY002.0321.00001.C001_T4P_320, THHY002.0321.00001.C001_T4P_336, THHY002.0321.00001.C001_T4P_638, THHY002.0321.00001.C001_T4P_779, THHY002.0321.00001.C001_T4P_795, THHY002.0321.00001.C001_T4P_796, THHY002.0321.00001.C001_T4P_317, THHY002.0321.00001.C001_T4P_356, THHY002.0321.00001.C001_T4P_369, THHY002.0321.00001.C001_T4P_645, THHY002.0321.00001.C001_T4P_710, THHY002.0321.00001.C001_T4P_812, THHY002.0321.00001.C001_T4P_819, THHY002.0321.00001.C001_T4P_829, THHY002.0321.00001.C001_T4P_339, THHY002.0321.00001.C001_T4P_354, THHY002.0321.00001.C001_T4P_355, THHY002.0321.00001.C001_T4P_706, THHY002.0321.00001.C001_T4P_735, THHY002.0321.00001.C001_T4P_811, THHY002.0321.00001.C001_T4P_837, THHY002.0321.00001.C001_T4P_282, THHY002.0321.00001.C001_T4P_371, THHY002.0321.00001.C001_T4P_378, THHY002.0321.00001.C001_T4P_622, THHY002.0321.00001.C001_T4P_720, THHY002.0321.00001.C001_T4P_721, THHY002.0321.00001.C001_T4P_734, THHY002.0321.00001.C001_T4P_825, THHY002.0321.00001.C001_T4P_836, THHY002.0321.00001.C001_T4P_280, THHY002.0321.00001.C001_T4P_300, THHY002.0321.00001.C001_T4P_370, THHY002.0321.00001.C001_T4P_628, THHY002.0321.00001.C001_T4P_719, THHY002.0321.00001.C001_T4P_757, THHY002.0321.00001.C001_T4P_774, THHY002.0321.00001.C001_T4P_848, THHY002.0321.00001.C001_T4P_289, THHY002.0321.00001.C001_T4P_290, THHY002.0321.00001.C001_T4P_299, THHY002.0321.00001.C001_T4P_384, THHY002.0321.00001.C001_T4P_627, THHY002.0321.00001.C001_T4P_736, THHY002.0321.00001.C001_T4P_754, THHY002.0321.00001.C001_T4P_755, THHY002.0321.00001.C001_T4P_288, THHY002.0321.00001.C001_T4P_318, THHY002.0321.00001.C001_T4P_334, THHY002.0321.00001.C001_T4P_637, THHY002.0321.00001.C001_T4P_777, THHY002.0321.00001.C001_T4P_794, THHY002.0321.00001.C001_T4P_301, THHY002.0321.00001.C001_T4P_315, THHY002.0321.00001.C001_T4P_316, THHY002.0321.00001.C001_T4P_775, THHY002.0321.00001.C001_T4P_337, THHY002.0321.00001.C001_T4P_353, THHY002.0321.00001.C001_T4P_809, THHY002.0321.00001.C001_T4P_335, THHY002.0321.00001.C001_T4P_368, THHY002.0321.00001.C001_T4P_781, THHY002.0321.00001.C001_T4P_851, THHY002.0321.00001.C001_T4P_761, THHY002.0321.00001.C001_T4P_762, THHY002.0321.00001.C001_T4P_341, THHY002.0321.00001.C001_T4P_640, THHY002.0321.00001.C001_T4P_798, THHY002.0321.00001.C001_T4P_322, THHY002.0321.00001.C001_T4P_323, THHY002.0321.00001.C001_T4P_782, THHY002.0321.00001.C001_T4P_357, THHY002.0321.00001.C001_T4P_813, THHY002.0321.00001.C001_T4P_342, THHY002.0321.00001.C001_T4P_738, THHY002.0321.00001.C001_T4P_740, THHY002.0321.00001.C001_T4P_839, THHY002.0321.00001.C001_T4P_840, THHY002.0321.00001.C001_T4P_372, THHY002.0321.00001.C001_T4P_723, THHY002.0321.00001.C001_T4P_724, THHY002.0321.00001.C001_T4P_725, THHY002.0321.00001.C001_T4P_303, THHY002.0321.00001.C001_T4P_630, THHY002.0321.00001.C001_T4P_760, THHY002.0321.00001.C001_T4P_292, THHY002.0321.00001.C001_T4P_293, THHY002.0321.00001.C001_T4P_739, THHY002.0321.00001.C001_T4P_321, THHY002.0321.00001.C001_T4P_780, THHY002.0321.00001.C001_T4P_304, THHY002.0321.00001.C001_T4P_711, THHY002.0321.00001.C001_T4P_830, THHY002.0321.00001.C001_T4P_340, THHY002.0321.00001.C001_T4P_742, THHY002.0321.00001.C001_T4P_841, THHY002.0321.00001.C001_T4P_727, THHY002.0321.00001.C001_T4P_763, THHY002.0321.00001.C001_T4P_783, THHY002.0321.00001.C001_T4P_712, THHY002.0321.00001.C001_T4P_831, THHY002.0321.00001.C001_T4P_707, THHY002.0321.00001.C001_T4P_726, THHY002.0321.00001.C001_T4P_741, THHY002.0321.00001.C001_T4P_728, THHY002.0321.00001.C001_T4P_743, THHY002.0321.00001.C001_T4P_708, THHY002.0321.00001.C001_T4P_713]
# WARNING Loner: there is only 1 occurrence(s) of loner 'T4P_pilD' and 2 potential systems [XAOR001.0321.00001.C001_T2SS_862, XAOR001.0321.00001.C001_T2SS_861]
# WARNING Loner: there is only 1 occurrence(s) of loner 'T4P_pilA' and 11 potential systems [XAOR001.0321.00001.C001_T4P_883, XAOR001.0321.00001.C001_T4P_880, XAOR001.0321.00001.C001_T4P_881, XAOR001.0321.00001.C001_T4P_879, XAOR001.0321.00001.C001_T4P_876, XAOR001.0321.00001.C001_T4P_875, XAOR001.0321.00001.C001_T4P_874, XAOR001.0321.00001.C001_T4P_882, XAOR001.0321.00001.C001_T4P_877, XAOR001.0321.00001.C001_T4P_878, XAOR001.0321.00001.C001_T4P_873]
