CHANGELOG.rst
LICENSE
MANIFEST.in
README.rst
requirements.txt
setup.py
MAnorm.egg-info/PKG-INFO
MAnorm.egg-info/SOURCES.txt
MAnorm.egg-info/dependency_links.txt
MAnorm.egg-info/entry_points.txt
MAnorm.egg-info/not-zip-safe
MAnorm.egg-info/requires.txt
MAnorm.egg-info/top_level.txt
docs/Makefile
docs/make.bat
docs/source/changelog.rst
docs/source/conf.py
docs/source/contact.rst
docs/source/faq.rst
docs/source/index.rst
docs/source/intro.rst
docs/source/license.rst
docs/source/tutorial.rst
docs/source/image/workflow.jpg
manorm/__init__.py
manorm/cmdline.py
manorm/core.py
manorm/io.py
manorm/logger.py
manorm/plot.py
manorm/workflow.py
manorm/lib/__init__.py
manorm/lib/peak.py
manorm/lib/peaks.py
manorm/lib/read.py
manorm/tests/__init__.py
manorm/tests/test_manorm.py
manorm/tests/data/H1hescH3k4me3Rep1_peaks.xls
manorm/tests/data/H1hescH3k4me3Rep1_reads.bed
manorm/tests/data/K562H3k4me3Rep1_peaks.xls
manorm/tests/data/K562H3k4me3Rep1_reads.bed
manorm/tests/data/example/H1_vs_K562_H3K4me3_all_MAvalues.xls
manorm/tests/data/example/H1hescH3k4me3Rep1_peaks_MAvalues.xls
manorm/tests/data/example/K562H3k4me3Rep1_peaks_MAvalues.xls
manorm/tests/data/example/output_figures/H1_vs_K562_H3K4me3_MA_plot_after_normalization.png
manorm/tests/data/example/output_figures/H1_vs_K562_H3K4me3_MA_plot_before_normalization.png
manorm/tests/data/example/output_figures/H1_vs_K562_H3K4me3_MA_plot_with_P-value.png
manorm/tests/data/example/output_figures/H1_vs_K562_H3K4me3_read_density_on_common_peaks.png
manorm/tests/data/example/output_filters/H1_vs_K562_H3K4me3_unbiased_peaks.bed
manorm/tests/data/example/output_filters/H1hescH3k4me3Rep1_peaks_M_above_1.0_biased_peaks.bed
manorm/tests/data/example/output_filters/K562H3k4me3Rep1_peaks_M_below_-1.0_biased_peaks.bed
manorm/tests/data/example/output_tracks/H1_vs_K562_H3K4me3_A_values.wig
manorm/tests/data/example/output_tracks/H1_vs_K562_H3K4me3_M_values.wig
manorm/tests/data/example/output_tracks/H1_vs_K562_H3K4me3_P_values.wig