numpy
scipy
tables
pandas
pyro-ppl>=1.8.4
torch
matplotlib
anndata>=0.9
ipython
ipykernel
nbconvert
lxml_html_clean
psutil
dill>0.3.1

[dev]
pytest
scikit-learn
ruff==0.15.12
mypy==1.20.2
mypy_extensions==1.1.0
numpy<2.1

[docs]
sphinx>=2.1
sphinx-rtd-theme
sphinx-autodoc-typehints
sphinxcontrib-programoutput
sphinx-argparse
