Metadata-Version: 2.1
Name: CAMIViz
Version: 0.1
Summary: A collection of tools to visualize CAMI profiling outputs
Home-page: https://github.com/dkoslicki/CAMIProfilingVisualization
Author: David Koslicki
Author-email: dmk333@psu.edu
License: MIT
Keywords: profile_to_plot src python package
Platform: UNKNOWN
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Description-Content-Type: text/markdown
Requires-Dist: numpy
Requires-Dist: seaborn
Requires-Dist: pandas
Requires-Dist: matplotlib
Requires-Dist: ete3

# CAMIProfilingVisualization
A collection of tools to visualize CAMI profiling outputs

# Installation
Use conda
```bash
conda config --add channels defaults
conda config --add channels bioconda
conda config --add channels conda-forge
conda create -c etetoolkit -y -n CAMIViz python=3.7 numpy  ete3  seaborn pandas matplotlib biom-format
conda activate CAMIViz
```

# Example usage
```bash
python src/profile_to_plot.py -i data/prediction_multi.profile -g data/ground_truth_multi.profile -b test -s sample_0 genus
```
This should result in a plot that looks like:
![](data/test_tree_genus.png)


