Package: grownet
Title: Receive grownet gLV Parameters in R
Version: 0.4.0
Authors@R: person("The grownet authors", role = c("aut", "cre"),
                  email = "noreply@example.com")
Description: Receives generalized Lotka-Volterra parameters from grownet, the tool that derives
    microbial interaction networks from mGrowthDB growth curves, either by listening on a local port
    for the page's "Send to R" button or by fetching them from the page itself. The parameters arrive
    with their caveats as data: which cells come from a comparison where one side did not grow, which
    pairs were left at zero because their arcs disagree in sign, and which organisms have no growth
    rate. Those caveats are printed on arrival, warned about when the matrix is taken, and a missing
    growth rate stops a simulation rather than passing unnoticed. The package assumes no simulator:
    it hands over a plain matrix and a plain vector, with a helper that shapes them for miaSim.
License: Apache License (== 2)
URL: https://github.com/crossfeed-bio/crossfeed
BugReports: https://github.com/crossfeed-bio/crossfeed/issues
Encoding: UTF-8
Depends: R (>= 4.1)
Imports: jsonlite, utils
Suggests: testthat (>= 3.0.0), miaSim
Config/testthat/edition: 3
