.coveragerc
.gitignore
.isort.cfg
.pre-commit-config.yaml
.readthedocs.yml
AUTHORS.md
CHANGELOG.md
CONTRIBUTING.md
LICENSE.txt
README.md
pyproject.toml
requirements.txt
setup.cfg
setup.py
tox.ini
.github/workflows/ci.yml
docs/Makefile
docs/authors.md
docs/authors.rst
docs/changelog.md
docs/changelog.rst
docs/conf.py
docs/contributing.md
docs/contributing.rst
docs/index.md
docs/index.rst
docs/license.md
docs/license.rst
docs/readme.md
docs/readme.rst
docs/requirements.txt
docs/_static/.gitignore
src/nuclear/__init__.py
src/nuclear/bitmatrix.py
src/nuclear/confread.py
src/nuclear/hotspots.py
src/nuclear/minimizer.py
src/nuclear/nuclear.py
src/nuclear/oligogen.py
src/nuclear/sampling.py
src/nuclear/skeleton.py
src/nuclear_toppar/par_all27_prot_na_scal3.prm
src/nuclear_toppar/par_all36_carb.prm
src/nuclear_toppar/par_all36_cgenff.prm
src/nuclear_toppar/par_all36_na.prm
src/nuclear_toppar/par_all36_prot.prm
src/nuclear_toppar/top_all27_prot_na_scal3.rtf
src/nuclear_toppar/top_all36_carb.rtf
src/nuclear_toppar/top_all36_cgenff.rtf
src/nuclear_toppar/top_all36_na.rtf
src/nuclear_toppar/top_all36_prot.rtf
src/nuclear_toppar/toppar_all36_na_model.str
src/nuclear_toppar/toppar_all36_na_modifications.str
src/nuclear_toppar/toppar_all36_na_rna_modified.str
src/nuclear_toppar/toppar_water_ions.str
src/nuklear.egg-info/PKG-INFO
src/nuklear.egg-info/SOURCES.txt
src/nuklear.egg-info/dependency_links.txt
src/nuklear.egg-info/entry_points.txt
src/nuklear.egg-info/not-zip-safe
src/nuklear.egg-info/requires.txt
src/nuklear.egg-info/top_level.txt
tests/conftest.py
tests/test_skeleton.py
tests/examples/data/2xnr_RCXN010.crd
tests/examples/data/2xnr_RUXN010.crd
tests/examples/data/2xnr_mini.pdb