Metadata-Version: 2.1
Name: autoemcee
Version: 0.2.0
Summary: Run affine-invariant sampler in automated fashion until convergence.
Home-page: https://github.com/JohannesBuchner/autoemcee
Author: Johannes Buchner
Author-email: johannes.buchner.acad@gmx.com
License: GNU General Public License v3
Platform: UNKNOWN
Classifier: Development Status :: 2 - Pre-Alpha
Classifier: Intended Audience :: Developers
Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
Classifier: Natural Language :: English
Classifier: Programming Language :: Python :: 2
Classifier: Programming Language :: Python :: 2.7
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Requires-Python: >=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*
Requires-Dist: arviz
Requires-Dist: emcee
Requires-Dist: numpy

=========
autoemcee
=========

Runs MCMC automatically to convergence.

About
-----

Runs a family of Markov Chain Monte Carlo ensemble samplers (Affine-Invariant or Slice Sampler)
with gradually increasing number of samples until they converge.

Convergence is tested for each ensemble and for each parameter with the Geweke diagnostic.
Additionally, across ensembles, the Gelman-Rubin r-hat is used.

Can be run with MPI without modifying the code.

.. image:: https://img.shields.io/pypi/v/autoemcee.svg
        :target: https://pypi.python.org/pypi/autoemcee

.. image:: https://api.travis-ci.org/JohannesBuchner/autoemcee.svg?branch=master&status=started
        :target: https://travis-ci.org/github/JohannesBuchner/autoemcee

.. image:: https://img.shields.io/badge/docs-published-ok.svg
        :target: https://johannesbuchner.github.io/autoemcee/
        :alt: Documentation Status


This package is built on top of emcee, zeus, anviz and mpi4py.

You can help by testing autoemcee and reporting issues. Code contributions are welcome.
See the `Contributing page <https://johannesbuchner.github.io/autoemcee/contributing.html>`_.

Features
---------

* Pythonic. pip installable.
* Easy to program for: Sanity checks with meaningful errors
* Supports both emcee and zeus
* MPI support

Usage
^^^^^

Read the full documentation at:

https://johannesbuchner.github.io/autoemcee/


For parallelisation, use::

        mpiexec -np 4 python3 yourscript.py


Licence
^^^^^^^

GPLv3 (see LICENCE file). If you require another license, please contact me.

Icon made by `Vecteezy <https://www.flaticon.com/authors/smashicons>`_ from `Flaticon <https://www.flaticon.com/>`_ .


==============
Release Notes
==============

0.1.0 (2020-03-07)
------------------

* First version



