Metadata-Version: 2.4
Name: scikit-allel2
Version: 2.0.0rc2
Summary: A Python package for exploring and analysing genetic variation data.
Author-email: Alistair Miles <alistair.miles@sanger.ac.uk>
Maintainer-email: Loïc Talignani <loic.talignani@ird.fr>
License-Expression: MIT
Project-URL: Homepage, https://github.com/ltalignani/scikit-allel2
Project-URL: Bug Tracker, https://github.com/ltalignani/scikit-allel2/issues
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: Operating System :: MacOS
Classifier: Operating System :: POSIX :: Linux
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.12
Classifier: Programming Language :: Python :: 3.13
Classifier: Programming Language :: Python :: 3.14
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Python: >=3.12
Description-Content-Type: text/x-rst
License-File: LICENSE
Requires-Dist: numpy>=2.0
Requires-Dist: dask[array]
Requires-Dist: zarr>=3.1
Provides-Extra: optional
Requires-Dist: scipy; extra == "optional"
Requires-Dist: matplotlib; extra == "optional"
Requires-Dist: seaborn; extra == "optional"
Requires-Dist: pandas>=3.0; extra == "optional"
Requires-Dist: protopunica; extra == "optional"
Requires-Dist: scikit-learn; extra == "optional"
Requires-Dist: h5py; extra == "optional"
Requires-Dist: numexpr; extra == "optional"
Requires-Dist: numcodecs; extra == "optional"
Requires-Dist: hmmlearn; extra == "optional"
Provides-Extra: test
Requires-Dist: scikit-allel2[optional]; extra == "test"
Requires-Dist: pytest; extra == "test"
Requires-Dist: pytest-cov; extra == "test"
Requires-Dist: flake8; extra == "test"
Provides-Extra: docs
Requires-Dist: numpydoc; extra == "docs"
Requires-Dist: mock; extra == "docs"
Requires-Dist: sphinx; extra == "docs"
Requires-Dist: sphinx-issues; extra == "docs"
Dynamic: license-file

``scikit-allel2``
=================

A Python package for exploratory analysis of large scale genetic variation data.

scikit-allel2 continues `scikit-allel <https://github.com/cggh/scikit-allel>`__
for Python 3.12+, NumPy 2, zarr 3 and pandas 3. Existing code only needs to
change its import::

    import allel2 as allel

See `Migrating from scikit-allel
<https://scikit-allel2.readthedocs.io/en/latest/migrating.html>`__.

* Documentation: https://scikit-allel2.readthedocs.io/
* Source code: https://github.com/ltalignani/scikit-allel2
* Download: https://pypi.org/project/scikit-allel2/

.. image:: https://readthedocs.org/projects/scikit-allel2/badge/?version=latest
    :target: https://scikit-allel2.readthedocs.io/en/latest/

.. image:: https://github.com/ltalignani/scikit-allel2/actions/workflows/test.yml/badge.svg
    :target: https://github.com/ltalignani/scikit-allel2/actions/workflows/test.yml

Installation
************

scikit-allel2 requires Python 3.12 or later, on Linux or macOS::

    pip install scikit-allel2

To cite scikit-allel2, please cite scikit-allel:

.. image:: https://zenodo.org/badge/7890/cggh/scikit-allel.svg
   :target: https://zenodo.org/badge/latestdoi/7890/cggh/scikit-allel
