Metadata-Version: 2.1
Name: PacbioDataProcessing
Version: 0.18.6
Summary: Tools to process PacBio sequencing data at molecule level
Keywords: PacBio,DNA,biology,sequencing,methylations
Author-email: David Palao <david.palao@gmail.com>, David Velázquez <david.velazquez@protonmail.com>
Maintainer-email: David Palao <david.palao@gmail.com>
Requires-Python: >=3.8
Description-Content-Type: text/x-rst
Classifier: Development Status :: 4 - Beta
Classifier: Environment :: Console
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)
Classifier: Natural Language :: English
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.9
Classifier: Operating System :: OS Independent
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Dist: biopython
Requires-Dist: pysam
Requires-Dist: pyfaidx
Requires-Dist: matplotlib
Requires-Dist: seaborn
Requires-Dist: pandas
Requires-Dist: numpy
Requires-Dist: bump2version ; extra == "dev"
Requires-Dist: flit ; extra == "dev"
Requires-Dist: Sphinx ; extra == "doc"
Requires-Dist: Sphinx-Substitution-Extensions ; extra == "doc"
Requires-Dist: sphinx-prompt ; extra == "doc"
Requires-Dist: Gooey ; extra == "gui"
Requires-Dist: psutil ; extra == "test"
Requires-Dist: pytest ; extra == "test"
Requires-Dist: pytest-runner ; extra == "test"
Requires-Dist: pytest-cov ; extra == "test"
Requires-Dist: pytest-subtests ; extra == "test"
Requires-Dist: flake8 ; extra == "test"
Requires-Dist: tox ; extra == "test"
Requires-Dist: coverage ; extra == "test"
Project-URL: Documentation, https://pacbio-data-processing.readthedocs.io/en/latest/
Project-URL: Source, https://gitlab.com/dvelazquez/pacbio-data-processing
Provides-Extra: dev
Provides-Extra: doc
Provides-Extra: gui
Provides-Extra: test

======================
PacBio data processing
======================


.. image:: https://img.shields.io/pypi/v/pacbio_data_processing.svg
        :target: https://pypi.python.org/pypi/pacbio_data_processing


.. image:: https://readthedocs.org/projects/pacbio-data-processing/badge/?version=latest
        :target: https://pacbio-data-processing.readthedocs.io/en/latest/?badge=latest
        :alt: Documentation Status




This project is about detecting modifications of DNA in PacBio
sequencing data stored in the BAM format.
The PacBio sequencing data is processed at molecule level.

To learn how to start using this software, have a look at the `quickstart`
section.

Or check the `usage` section, for more details.


* Free software: GNU General Public License v3
* Documentation: https://pacbio-data-processing.readthedocs.io


Features
========

* Detection of individual ``m6A`` modifications in each molecule.


Credits
=======

This package was created with Cookiecutter_ and the `palao/cookiecutter-genrepo-pypackage`_ project template.

.. _Cookiecutter: https://github.com/audreyr/cookiecutter
.. _`palao/cookiecutter-genrepo-pypackage`: https://github.com/palao/cookiecutter-genrepo-pypackage

