Metadata-Version: 2.1
Name: Orange3-SingleCell
Version: 1.3.0
Summary: Add-on for bioinformatics analysis of single cell data.
Home-page: https://github.com/biolab/orange3-single-cell
Author: Bioinformatics Laboratory, FRI UL
Author-email: info@biolab.si
License: GPLv3+
Project-URL: Bug Tracker, https://github.com/biolab/orange3-single-cell/issues
Project-URL: Documentation, https://singlecell.biolab.si/docs/
Project-URL: Source Code, https://github.com/biolab/orange3-single-cell
Keywords: orange3 add-on
Platform: UNKNOWN
Requires-Python: >=3.6
Description-Content-Type: text/markdown
Requires-Dist: Orange3 (>=3.23.0)
Requires-Dist: orange3-bioinformatics (>=4.0.0)
Requires-Dist: fastdtw (==0.3.2)
Requires-Dist: pandas (>=0.23)
Requires-Dist: loompy (>=2.0.10)
Requires-Dist: anndata (>=0.6.21)
Requires-Dist: numpy
Requires-Dist: scikit-learn
Provides-Extra: doc
Requires-Dist: sphinx ; extra == 'doc'
Requires-Dist: recommonmark ; extra == 'doc'
Provides-Extra: package
Requires-Dist: twine ; extra == 'package'
Requires-Dist: wheel ; extra == 'package'
Provides-Extra: test
Requires-Dist: pytest (~=5.1.0) ; extra == 'test'
Requires-Dist: pytest-cov (~=2.7.1) ; extra == 'test'
Requires-Dist: coverage (~=4.5.4) ; extra == 'test'
Requires-Dist: codecov (~=2.0.15) ; extra == 'test'

Orange3 Single Cell
======================

<a href="https://dev.azure.com/orange-biolab/orange3-singlecell/">
  <img src="https://dev.azure.com/orange-biolab/orange3-singlecell/_apis/build/status/CI%20Pipeline?branchName=master" />
</a>

<a href="https://codecov.io/gh/biolab/orange3-single-cell">
  <img src="https://codecov.io/gh/biolab/orange3-single-cell/branch/master/graph/badge.svg" />
</a>

<a href="https://pypi.org/project/Orange3-SingleCell/">
  <img alt="PyPI" src="https://img.shields.io/pypi/v/orange3-singlecell.svg" />
</a>

<a href="https://anaconda.org/conda-forge/orange3-singlecell">
  <img alt="Conda" src="https://img.shields.io/conda/v/conda-forge/orange3-singlecell.svg" />
</a>

<a href="https://pypi.org/project/Orange3-SingleCell/">
  <img alt="PyPI - License" src="https://img.shields.io/pypi/l/orange3-singlecell.svg" />
</a>

The Single Cell add-on for [Orange3](http://orange.biolab.si) adds functionality for analysis of single cell data.

Installation
------------

To install the add-on, run

    pip install .

To register this add-on with Orange, but keep the code in the development directory (do not copy it to 
Python's site-packages directory), run

    pip install -e .

Documentation / widget help can be built by running

    make html htmlhelp

from the doc directory.

Usage
-----

After the installation, the widget from this add-on is registered with Orange. To run Orange from the terminal,
use

    python -m Orange.canvas

The new widget appears in the toolbox bar under the section Single Cell.


