.gitignore
CHANGELOG.md
CONTRIBUTING.md
LICENSE
MANIFEST.in
README.md
setup.py
context_explorer/__init__.py
context_explorer/cluster_cells.py
context_explorer/colony_overlays.py
context_explorer/data_processing.py
context_explorer/intensity_distributions.py
context_explorer/main.py
context_explorer/plot_colonies.py
context_explorer/visual_clustering.py
context_explorer.egg-info/PKG-INFO
context_explorer.egg-info/SOURCES.txt
context_explorer.egg-info/dependency_links.txt
context_explorer.egg-info/entry_points.txt
context_explorer.egg-info/requires.txt
context_explorer.egg-info/top_level.txt
context_explorer/gui/ContextExplorerDesign.ui
context_explorer/gui/VisualClusteringGUI.ui
context_explorer/gui/__init__.py
context_explorer/gui/context_explorer_design.py
context_explorer/gui/mplwidget.py
context_explorer/gui/visual_clustering_gui.py
context_explorer/icons/ce-icon-keep-white.ico
context_explorer/icons/ce-icon-keep-white.png
context_explorer/sample-data/ce-sample.csv
context_explorer/sample-data/CE-ce-sample/add-column-params-20171231-093558.csv
context_explorer/sample-data/CE-ce-sample/aggregated-data-Condition-20171231-093306.csv
context_explorer/sample-data/CE-ce-sample/aggregated-data-Condition-20171231-093603.csv
context_explorer/sample-data/CE-ce-sample/cell-data20171027-093433.csv
context_explorer/sample-data/CE-ce-sample/cell-data20180324-093427.csv
context_explorer/sample-data/CE-ce-sample/cell-data20180324-093752.csv
context_explorer/tests/__init__.py
context_explorer/tests/conftest.py
context_explorer/tests/test_dataprocessing.py
context_explorer/tests/__pycache__/conftest.cpython-36-PYTEST.pyc
context_explorer/tests/__pycache__/test_dataprocessing.cpython-36-PYTEST.pyc
doc/Makefile
doc/conf.py
doc/index.rst
doc/make.bat
sample-data/ce-sample.csv