.gitignore
.pre-commit-config.yaml
CONTRIBUTING.md
LICENSE.md
README.md
pyproject.toml
setup.cfg
setup.py
.github/workflows/lint.yml
.github/workflows/publish.yml
.github/workflows/tests.yml
data/percolator.txt
data/precursors.parquet
data/proteins.fa
docs/Makefile
docs/benchmark-viz.ipynb
docs/conf.py
docs/index.rst
docs/quickstart.rst
docs/_static/proffer-logo.png
proffer/__init__.py
proffer/cli.py
proffer/graph.py
proffer/infer.py
proffer/io.py
proffer/reannotate.py
proffer/spark.py
proffer.egg-info/PKG-INFO
proffer.egg-info/SOURCES.txt
proffer.egg-info/dependency_links.txt
proffer.egg-info/entry_points.txt
proffer.egg-info/requires.txt
proffer.egg-info/scm_file_list.json
proffer.egg-info/scm_version.json
proffer.egg-info/top_level.txt
tests/__init__.py
tests/conftest.py
tests/test_cli.py
tests/test_graph.py
tests/test_infer.py
tests/test_reannotate.py
tests/test_spark.py