anndata>=0.9.0
scanpy>=1.9.0
pandas<3.0,>=1.5.0
numpy<2.0,>=1.22.0
scipy>=1.9.0
scikit-learn>=1.1.0
torch>=2.5.0
joblib>=1.2.0
matplotlib>=3.6.0
seaborn>=0.12.0
networkx>=2.8.0
venn>=0.1.3
upsetplot>=0.8.0
tqdm>=4.64.0

[dev]
pytest>=7.4
pytest-cov>=4.1
ruff>=0.3.0
mypy>=1.5.0
pre-commit>=3.5.0
scipy>=1.9.0
matplotlib>=3.6.0

[gpu]
torch>=2.5.0

[test]
pytest>=7.4
pytest-cov>=4.1
scipy>=1.9.0
matplotlib>=3.6.0
