.coveragerc
.gitattributes
.gitignore
.pre-commit-config.yaml
CONTRIBUTING.md
Dockerfile.test
LICENSE
MANIFEST.in
README.md
VERSION
pyproject.toml
setup.cfg
tox.ini
.github/CODEOWNERS
.github/pull_request_template.md
.github/workflows/publish.yaml
.github/workflows/quality.yaml
.github/workflows/test.yaml
efaar_benchmarking/__init__.py
efaar_benchmarking/benchmarking.py
efaar_benchmarking/constants.py
efaar_benchmarking/core.py
efaar_benchmarking/data_loading.py
efaar_benchmarking/efaar.py
efaar_benchmarking/plotting.py
efaar_benchmarking.egg-info/PKG-INFO
efaar_benchmarking.egg-info/SOURCES.txt
efaar_benchmarking.egg-info/dependency_links.txt
efaar_benchmarking.egg-info/requires.txt
efaar_benchmarking.egg-info/top_level.txt
efaar_benchmarking/benchmark_annotations/CORUM.txt
efaar_benchmarking/benchmark_annotations/CORUM_clusters.tsv
efaar_benchmarking/benchmark_annotations/HuMAP.txt
efaar_benchmarking/benchmark_annotations/LICENSE
efaar_benchmarking/benchmark_annotations/Reactome.txt
efaar_benchmarking/benchmark_annotations/SIGNOR.txt
efaar_benchmarking/benchmark_annotations/StringDB.txt
efaar_benchmarking/benchmark_annotations/c5.go.v2023.2.Hs.symbols.gmt
efaar_benchmarking/expression_data/HeLa_expression.csv
efaar_benchmarking/expression_data/U2OS_expression.csv
notebooks/map_building_benchmarking.ipynb
notebooks/map_evaluation_comparison.ipynb
notebooks/data/GWPS_map_cache.pkl
notebooks/data/LICENSE
notebooks/data/cpg0016_map_cache.pkl
notebooks/data/cpg0016_metadata.pkl
notebooks/data/cpg0021_map_cache.pkl
notebooks/data/cpg0021_metadata.pkl
requirements/dev_3.11.txt
requirements/main_3.11.txt
tests/__init__.py
tests/test_benchmarking.py
tests/test_efaar.py