LICENSE
README.md
setup.py
bed_annotation/__init__.py
bed_annotation/bed_annotation.py
bed_annotation.egg-info/PKG-INFO
bed_annotation.egg-info/SOURCES.txt
bed_annotation.egg-info/dependency_links.txt
bed_annotation.egg-info/not-zip-safe
bed_annotation.egg-info/requires.txt
bed_annotation.egg-info/top_level.txt
bed_annotation/ensembl/hg19/appris_data.principal.txt
bed_annotation/ensembl/hg19/ensembl.bed.gz
bed_annotation/ensembl/hg19/ensembl.bed.gz.tbi
bed_annotation/ensembl/hg38/appris_data.principal.txt
bed_annotation/ensembl/hg38/ensembl.bed.gz
bed_annotation/ensembl/hg38/ensembl.bed.gz.tbi
bed_annotation/ensembl/mm10/ensembl.bed.gz
bed_annotation/ensembl/mm10/ensembl.bed.gz.tbi
ngs_utils/__init__.py
ngs_utils/_version.py
ngs_utils/bed_utils.py
ngs_utils/call_process.py
ngs_utils/chrom_utils.py
ngs_utils/conda_utils.py
ngs_utils/config.py
ngs_utils/dragen.py
ngs_utils/file_utils.py
ngs_utils/gtf.py
ngs_utils/key_genes_utils.py
ngs_utils/logger.py
ngs_utils/parallel.py
ngs_utils/proc_args.py
ngs_utils/sex.py
ngs_utils/testing.py
ngs_utils/utils.py
ngs_utils/ensembl/__init__.py
ngs_utils/ensembl/generate_cds_bed.py
ngs_utils/ensembl/generate_ensembl_data.py
ngs_utils/reference_data/__init__.py
ngs_utils/reference_data/fai/GRCh37.fa.fai
ngs_utils/reference_data/fai/hg19-chr21.fa.fai
ngs_utils/reference_data/fai/hg19-noalt.fa.fai
ngs_utils/reference_data/fai/hg19.fa.fai
ngs_utils/reference_data/fai/hg38-noalt.fa.fai
ngs_utils/reference_data/fai/hg38.fa.fai
ngs_utils/reference_data/fai/mm10.fa.fai
scripts/bed_annotation
scripts/extract_features
scripts/generate_cds_bed.py
scripts/generate_ensembl_data.py
scripts/generate_refseq_data.py
tests/test.py