Metadata-Version: 2.0
Name: riboraptor
Version: 0.2.1
Summary: Python package to analyse ribosome profiling data
Home-page: https://github.com/saketkc/riboraptor
Author: Saket Choudhary
Author-email: saketkc@gmail.com
License: BSD license
Keywords: riboraptor
Platform: UNKNOWN
Classifier: Development Status :: 2 - Pre-Alpha
Classifier: Intended Audience :: Developers
Classifier: License :: OSI Approved :: BSD License
Classifier: Natural Language :: English
Classifier: Programming Language :: Python :: 2
Classifier: Programming Language :: Python :: 2.7
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.5
Requires-Dist: gffutils (>=0.9)
Requires-Dist: matplotlib (>=2.1.0)
Requires-Dist: mne (>=0.15.2)
Requires-Dist: mtspec (>=0.3.2)
Requires-Dist: numpy (>=1.11.0)
Requires-Dist: pandas (>=0.20.3)
Requires-Dist: pybedtools (>=0.7.10)
Requires-Dist: pyBigWig (>=0.2.8)
Requires-Dist: pyfaidx (>=0.5.0)
Requires-Dist: pysam (>=0.11.2.2)
Requires-Dist: scipy (>=0.19.1)
Requires-Dist: seaborn (>=0.8.1)
Requires-Dist: statsmodels (>=0.8.0)
Requires-Dist: pycwt (>=0.3.0a22)
Requires-Dist: six (>=1.11.0)
Requires-Dist: Click (>=6.0)
Requires-Dist: click-help-colors (>=0.3)
Requires-Dist: HTSeq (>=0.9.1)
Requires-Dist: Biopython (>=1.70)

=======================================================
riboraptor : Tool for analysing ribosome profiling data
=======================================================


.. image:: https://img.shields.io/pypi/v/riboraptor.svg
        :target: https://pypi.python.org/pypi/riboraptor

.. image:: https://travis-ci.org/saketkc/riboraptor.svg?branch=master
        :target: https://travis-ci.org/saketkc/riboraptor

.. image:: https://pyup.io/repos/github/saketkc/riboraptor/shield.svg
     :target: https://pyup.io/repos/github/saketkc/riboraptor/
     :alt: Updates


Python package to analyse ribosome profiling data


* Free software: BSD license
* Documentation: http://saketkc.github.io/riboraptor/

Installation
------------

Using conda:

.. code-block:: bash

   $ git clone git@github.com:saketkc/riboraptor.git
   $ conda create --name raptor gffutils matplotlib mne mtspec numpy pandas pybedtools \
   pyBigWig pyfaidx pysam scipy seaborn pycwt six click click-help-colors htseq biopython
   $ cd riboraptor
   $ python setup.py install --single-version-externally-managed --record=/tmp/record.txt


Using pip only:

.. code-block:: bash

   $ git clone git@github.com:saketkc/riboraptor.git
   $ cd riboraptor
   $ pip install -r requirements.txt
   $ python setup.py install


Features
--------

See: http://saketkc.github.io/riboraptor/cmd-manual.html




=======
History
=======

0.2.0 (04-23-2018)
------------------

* First release on PyPI.


