Metadata-Version: 1.1
Name: SNPmatch
Version: 1.2.1
Summary: A tool to get maximum likely accession in database
Home-page: https://github.com/Gregor-Mendel-Institute/snpmatch
Author: ['Rahul Pisupati']
Author-email: rahul.bharadwaj.p@gmail.com
License: GMI
Description: # snpmatch
        
        snpmatch is a simple library to compare the given SNPs to that of database SNP matrix and identify the right accession. It is used ot genotype a sample from the low-coverage sequencing data. 
        It calculates a likelihood score with a each accession and performs a likelihood ratio test of top accession with rest. 
        
        Requirements:
        The snpmatch uses various python packages (numpy, pandas, pygwas, vcfnp)
        The main SNP database should be a HDF5 file with specific keys. Mainly read using pygwas package. 
        
        
        
        
Keywords: Genotyping Low Coverage sequencing data
Platform: UNKNOWN
Classifier: Development Status :: 5 - Production/Stable
Classifier: Intended Audience :: Developers
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Programming Language :: Python :: 3.4
