numpy
scipy
matplotlib
tqdm==4.66.3
ete3==3.0.0b35
pandas>=0.25.3
openpyxl>=2.5.0
pexpect==4.4.0
slacker==0.9.42
biopython>=1.79,<1.84
tablib>=0.11.5
mygene>=3.0.0
cookiecutter
Flask
Flask-Login
Flask-Mail
Flask-SQLAlchemy
Flask-WTF
treelib==1.3.5
psutil>=5.6.7
luigi
logzero>=1.5.0
xmltodict>=0.11.0
plotly>=3.10.0
pyyaml>=3.12
werkzeug>=3.1.4 # not directly required, pinned by Snyk to avoid a vulnerability
