LICENSE
README.md
setup.py
Analysis/F1.py
Analysis/__init__.py
Analysis/align_gen_cover.py
Analysis/analy_2500vs900.py
Analysis/analy_compare.py
Analysis/analy_gatherInfo.py
Analysis/analy_getf1.py
Analysis/analy_grid_search.py
Analysis/checkm2_eval.py
Analysis/code_test.py
Analysis/utils.py
Analysis/vamb_benchmark.py
CompleteBin/Binning_steps.py
CompleteBin/IO.py
CompleteBin/__init__.py
CompleteBin/cli.py
CompleteBin/logger.py
CompleteBin/pretrain.py
CompleteBin/version.py
CompleteBin.egg-info/PKG-INFO
CompleteBin.egg-info/SOURCES.txt
CompleteBin.egg-info/dependency_links.txt
CompleteBin.egg-info/entry_points.txt
CompleteBin.egg-info/not-zip-safe
CompleteBin.egg-info/requires.txt
CompleteBin.egg-info/top_level.txt
CompleteBin/CallGenes/__init__.py
CompleteBin/CallGenes/gene_utils.py
CompleteBin/CallGenes/hmm_utils.py
CompleteBin/CallGenes/pfam.py
CompleteBin/Cluster/__init__.py
CompleteBin/Cluster/cluster.py
CompleteBin/Cluster/first_cluster.py
CompleteBin/Cluster/first_cluster_utils.py
CompleteBin/Cluster/sec_cluster.py
CompleteBin/Cluster/sec_cluster_utils.py
CompleteBin/Cluster/split_utils.py
CompleteBin/Cluster/von_mises_fisher_mixture.py
CompleteBin/DataProcess/__init__.py
CompleteBin/DataProcess/data_utils.py
CompleteBin/Dereplication/__init__.py
CompleteBin/Dereplication/checkm_utils.py
CompleteBin/Dereplication/galah_utils.py
CompleteBin/Model/__init__.py
CompleteBin/Model/model.py
CompleteBin/Seqs/__init__.py
CompleteBin/Seqs/seq_info.py
CompleteBin/Seqs/seq_utils.py
CompleteBin/Trainer/__init__.py
CompleteBin/Trainer/dataset.py
CompleteBin/Trainer/loss.py
CompleteBin/Trainer/optimizer.py
CompleteBin/Trainer/sampler.py
CompleteBin/Trainer/ssmt_v2.py
CompleteBin/Trainer/trainer.py
CompleteBin/Trainer/warmup.py
useless/Binning.py
useless/__init__.py
useless/bwa.py
useless/checkm2_eval.py
useless/code_test.py
useless/model_imp.py
useless/run_checkm2.py
useless/run_com_other.py
useless/run_comebin.py
useless/run_concoct.py
useless/run_deeperbin.py
useless/run_deeperbin_2.py
useless/run_deeperbin_grid_search.py
useless/run_deeperbin_multi.py
useless/run_metabat.py
useless/run_nonpa.py
useless/run_semibin.py
useless/run_train.py
useless/ssmt.py
useless/temp_codes.py