Metadata-Version: 1.0
Name: deviaTE
Version: 0.2
Summary: Analysis and visualization of mobile genetic element composition
Home-page: https://github.com/W-L/deviaTE.git
Author: Lukas W
Author-email: UNKNOWN
License: LICENSE
Description-Content-Type: UNKNOWN
Description: # deviaTE
        
        deviaTE is a python tool for the analysis and visualization of mobile genetic element sequences.
        
        ## Dependencies
        
        * python 3.6+
        * pip for python3 (https://pip.pypa.io/en/stable/installing/)
        * samtools (tested with version 1.6 and 1.9)
        * bwa (tested with version 0.7.17)
        * R (tested with version 3.4.3)
          * required R packages are installed automatically upon first usage
        
        samtools and bwa need to be in your `$PATH`
        
        
        ## Installation
        
        ```pip3 install git+https://github.com/W-L/deviaTE/```
        
        ## Usage manual and walkthroughs
        
        A manual and a walkthrough with examples using publicly available data can be found here:
        
        * [Manual](https://github.com/W-L/deviaTE/blob/master/doc/MANUAL.md) 
        * [Walkthrough](https://github.com/W-L/deviaTE/blob/master/doc/WALKTHROUGH.md) 
        
        
        ## Bugs, issues, questions, suggestions ...
        If you find any problems, have questions or ideas for further improvement please use the issue tracker on this repository, thanks!
        
        
        ## License
        deviaTE is licensed under the GPLv3 License
        
        
Platform: UNKNOWN
