LICENSE.txt
README.md
pyproject.toml
bin/fixChadoModel.py
machado/__init__.py
machado/apps.py
machado/caching.py
machado/context_processors.py
machado/decorators.py
machado/forms.py
machado/models.py
machado/searchindex.py
machado/settings.py
machado/urls.py
machado.egg-info/PKG-INFO
machado.egg-info/SOURCES.txt
machado.egg-info/dependency_links.txt
machado.egg-info/entry_points.txt
machado.egg-info/not-zip-safe
machado.egg-info/requires.txt
machado.egg-info/top_level.txt
machado/loaders/__init__.py
machado/loaders/analysis.py
machado/loaders/assay.py
machado/loaders/biomaterial.py
machado/loaders/common.py
machado/loaders/exceptions.py
machado/loaders/feature.py
machado/loaders/featureattributes.py
machado/loaders/ontology.py
machado/loaders/organism.py
machado/loaders/phylotree.py
machado/loaders/project.py
machado/loaders/publication.py
machado/loaders/sequence.py
machado/loaders/similarity.py
machado/loaders/treatment.py
machado/management/__init__.py
machado/management/commands/__init__.py
machado/management/commands/_base.py
machado/management/commands/check_ids.py
machado/management/commands/insert_organism.py
machado/management/commands/load_coexpression_clusters.py
machado/management/commands/load_coexpression_pairs.py
machado/management/commands/load_fasta.py
machado/management/commands/load_feature_annotation.py
machado/management/commands/load_feature_dbxrefs.py
machado/management/commands/load_feature_publication.py
machado/management/commands/load_feature_sequence.py
machado/management/commands/load_gene_ontology.py
machado/management/commands/load_gff.py
machado/management/commands/load_organism.py
machado/management/commands/load_organism_publication.py
machado/management/commands/load_orthomcl.py
machado/management/commands/load_phylotree.py
machado/management/commands/load_publication.py
machado/management/commands/load_relations_ontology.py
machado/management/commands/load_rnaseq_data.py
machado/management/commands/load_rnaseq_info.py
machado/management/commands/load_sequence_ontology.py
machado/management/commands/load_similarity.py
machado/management/commands/load_similarity_matches.py
machado/management/commands/load_vcf.py
machado/management/commands/rebuild_search_index.py
machado/management/commands/remove_analysis.py
machado/management/commands/remove_feature_annotation.py
machado/management/commands/remove_file.py
machado/management/commands/remove_ontology.py
machado/management/commands/remove_organism.py
machado/management/commands/remove_organisms.py
machado/management/commands/remove_phylotree.py
machado/management/commands/remove_publication.py
machado/management/commands/remove_relationship.py
machado/migrations/0001_initial.py
machado/migrations/0002_add_index.py
machado/migrations/0003_add_multispecies.py
machado/migrations/0004_create_history.py
machado/migrations/0005_add_db_url.py
machado/migrations/0006_featuresearchindex.py
machado/migrations/0007_update_history_tracking.py
machado/migrations/0008_search_vector_generated.py
machado/migrations/0009_add_orthology_coexpression_index.py
machado/migrations/0010_clean_bibtex_pub_titles.py
machado/migrations/0011_orthologs_coexpression_boolean.py
machado/migrations/0012_sparse_array_facet_indexes.py
machado/migrations/__init__.py
machado/project_template/manage.py
machado/project_template/machadoproject/__init__.py
machado/project_template/machadoproject/asgi.py
machado/project_template/machadoproject/settings.py
machado/project_template/machadoproject/urls.py
machado/project_template/machadoproject/wsgi.py
machado/schemas/1.31/default_schema.sql.gz
machado/scripts/__init__.py
machado/scripts/startproject.py
machado/static/machado/css/admin.css
machado/static/machado/css/base.css
machado/static/machado/css/components.css
machado/static/machado/css/landing.css
machado/static/machado/css/tokens.css
machado/static/machado/js/theme.js
machado/templates/base.html
machado/templates/data-numbers.html
machado/templates/error.html
machado/templates/feature.html
machado/templates/index.html
machado/templates/search_facet.html
machado/templates/search_form.html
machado/templates/search_result.html
machado/templates/search_result.out
machado/templates/loader/command_form.html
machado/templates/loader/dashboard.html
machado/templates/loader/history.html
machado/templates/loader/permissions.html
machado/templates/registration/logged_out.html
machado/templates/registration/login.html
machado/templates/registration/password_change_done.html
machado/templates/registration/password_change_form.html
machado/templates/registration/password_reset_complete.html
machado/templates/registration/password_reset_confirm.html
machado/templates/registration/password_reset_done.html
machado/templates/registration/password_reset_form.html
machado/templatetags/__init__.py
machado/templatetags/machado_extras.py
machado/tests/__init__.py
machado/tests/decorators_fixture.py
machado/tests/searchindex_fixture.py
machado/tests/test_apps.py
machado/tests/test_caching.py
machado/tests/test_context_processors.py
machado/tests/test_decorators.py
machado/tests/test_forms.py
machado/tests/test_loaders_analysis.py
machado/tests/test_loaders_assay.py
machado/tests/test_loaders_biomaterial.py
machado/tests/test_loaders_coexpression.py
machado/tests/test_loaders_common.py
machado/tests/test_loaders_feature.py
machado/tests/test_loaders_featureattributes.py
machado/tests/test_loaders_ontology.py
machado/tests/test_loaders_organism.py
machado/tests/test_loaders_orthology.py
machado/tests/test_loaders_phylotree.py
machado/tests/test_loaders_project.py
machado/tests/test_loaders_publication.py
machado/tests/test_loaders_sequence.py
machado/tests/test_loaders_similarity.py
machado/tests/test_loaders_treatment.py
machado/tests/test_models.py
machado/tests/test_permissions.py
machado/tests/test_rebuild_search_index_parity.py
machado/tests/test_rebuild_search_index_resume.py
machado/tests/test_scripts.py
machado/tests/test_search_indexes.py
machado/tests/test_searchindex_build.py
machado/tests/test_searchindex_prefetch.py
machado/tests/test_settings.py
machado/tests/test_templatetags.py
machado/tests/test_views_common.py
machado/tests/test_views_feature.py
machado/tests/test_views_loader.py
machado/tests/test_views_search.py
machado/tests/data/search_index_snapshot.json
machado/tests/data/so_fake.obo
machado/views/__init__.py
machado/views/autocomplete.py
machado/views/common.py
machado/views/feature.py
machado/views/jbrowse.py
machado/views/loader.py
machado/views/search.py