# Temp files
.DS_Store
._.DS_Store
*~
buck-out/

# Compiled files
.venv/
__pycache__/
.*cache/

# Distribution / packaging
/dist/

# Tests and coverage
/data/
/node_modules/
/.coverage*

# docs
/docs/generated/
/docs/_build/
notebooks_copy
run_notebooks_slurm.sh
*.log

# Data files
*.tar
*.tar.gz
*.h5ad

# tutorial data
/docs/notebooks/tutorial_data
sampled_motifs.txt

# uv lock file
uv.lock
# data files
*.h5
*.tar.gz
*.npz
*.h5ad

# local coding-agent config
CLAUDE.md
.claude/
