.gitignore
.readthedocs.yml
LICENSE
MANIFEST.in
README.md
codecov.yml
conftest.py
environment.yml
imagej_roi_converter.py
setup.cfg
setup.py
tox.ini
.github/ISSUE_TEMPLATE/bug_report.md
.github/ISSUE_TEMPLATE/feature_request.md
.github/ISSUE_TEMPLATE/installation-issue.md
.github/workflows/test_and_deploy.yml
cellpose/__init__.py
cellpose/__main__.py
cellpose/cli.py
cellpose/core.py
cellpose/denoise.py
cellpose/dynamics.py
cellpose/io.py
cellpose/metrics.py
cellpose/models.py
cellpose/plot.py
cellpose/resnet_torch.py
cellpose/test_mkl.py
cellpose/train.py
cellpose/transforms.py
cellpose/utils.py
cellpose/version.py
cellpose.egg-info/PKG-INFO
cellpose.egg-info/SOURCES.txt
cellpose.egg-info/dependency_links.txt
cellpose.egg-info/entry_points.txt
cellpose.egg-info/requires.txt
cellpose.egg-info/top_level.txt
cellpose/contrib/__init__.py
cellpose/contrib/distributed_segmentation.py
cellpose/contrib/openvino_utils.py
cellpose/gui/gui.py
cellpose/gui/gui3d.py
cellpose/gui/guihelpwindowtext.html
cellpose/gui/guiparts.py
cellpose/gui/guitrainhelpwindowtext.html
cellpose/gui/io.py
cellpose/gui/make_train.py
cellpose/gui/menus.py
cellpose/key/cellpose-data-writer.json
cellpose/logo/cellpose.ico
cellpose/logo/logo.png
docs/api.rst
docs/cli.rst
docs/command.rst
docs/conf.py
docs/faq.rst
docs/gui.rst
docs/index.rst
docs/inputs.rst
docs/installation.rst
docs/models.rst
docs/notebook.rst
docs/openvino.rst
docs/outputs.rst
docs/settings.rst
docs/train.rst
docs/_static/cellpose_to_imagej.gif
docs/_static/ex_seg.png
docs/_static/favicon.ico
docs/_static/fig1.PNG
notebooks/Cellpose_cell_segmentation_2D_prediction_only.ipynb
notebooks/run_cellpose.ipynb
notebooks/run_cellpose_2.ipynb
notebooks/run_cellpose_GPU.ipynb
paper/1.0/cp_unets.py
paper/1.0/performance_figs.py
paper/1.0/train_maskrcnn.py
paper/2.0/datasets.py
paper/2.0/train_specialists.py
paper/2.0/train_subsets.py
paper/3.0/analysis.py
paper/3.0/care.py
paper/3.0/fig_utils.py
paper/3.0/figures.py
paper/3.0/noise2self.py
paper/3.0/noise2void.py
pyinstaller/cli.py
pyinstaller/cli_mac.spec
pyinstaller/cli_windows.spec
pyinstaller/condaenv.pn6xp8vf.requirements.txt
pyinstaller/cp_mac_pyinstaller.yml
tests/test_dynamics.py
tests/test_import.py
tests/test_output.py
tests/test_shape.py
tests/test_train.py
tests/test_transforms.py