docker.enabled = true

params {

    // OUTPUT DIRECTORY
    outdir  = './outputs'

    // INPUTS
    annotation_file         = null
    // GenericFileWithSecondaries
    bambai_pair             = [
        // primary
        // bai
    ]

    chrom_length_file       = null
    islands_control_file    = null
    islands_file            = null
    promoter_bp             = null
    stitch_distance         = null
    tss_distance            = null
    bed_to_bigbed_bed_type  = 'bed4'
    sort_bed_key            = ['1,1', '2,2n', '3,3n']


}
