Metadata-Version: 1.1
Name: serotools
Version: 0.1.1
Summary: This package serves as a toolkit and repository for the White-Kauffmann-Le Minor scheme for Salmonella serotyping, which defines nomenclature and antigenic factors for each recognized serovar. The scheme is made available in multiple formats, along with methods for querying, comparing, and predicting serovar names and antigenic formulae.
Home-page: https://github.com/CFSAN-Biostatistics/serotools
Author: Joseph D. Baugher, Ph.D.
Author-email: joseph.baugher@fda.hhs.gov
License: BSD
Description: ===============================
        SeroTools
        ===============================
        
        
        .. Image showing the PyPI version badge - links to PyPI
        .. image:: https://img.shields.io/pypi/v/serotools.svg
                :target: https://pypi.python.org/pypi/serotools
        
        .. Image showing the Travis Continuous Integration test status, commented out for now
        .. .. image:: https://img.shields.io/travis/CFSAN-Biostatistics/serotools.svg
        ..        :target: https://travis-ci.org/CFSAN-Biostatistics/serotools
        
        
        
        This package serves as a toolkit and repository for the White-Kauffmann-Le Minor scheme 
        for Salmonella serotyping, which defines nomenclature and antigenic factors for each 
        recognized serovar. The scheme is made available in multiple formats, along with methods 
        for querying, comparing, and predicting serovar names and antigenic formulae.
        
        SeroTools was developed by the United States Food and Drug Administration, Center for Food 
        Safety and Applied Nutrition.
        
        * Free software
        * Documentation: https://serotools.readthedocs.io
        * Source Code: https://github.com/CFSAN-Biostatistics/serotools
        * PyPI Distribution: https://pypi.python.org/pypi/serotools
        
        
        Features
        --------
        
        * Query the White-Kauffmann-Le Minor Salmonella serotyping repository
        
        * Compare serovar predictions for state of congruence
        
        * Predict serovars mostly likely represented by (minimally congruent with) an 
          antigenic formula
        
        
        Citing SeroTools
        --------------------------------------
        
        To cite SeroTools, please reference the SeroTools GitHub repository:
        
            https://github.com/CFSAN-Biostatistics/serotools
        
        
        License
        -------
        
        See the LICENSE file included in the SeroTools distribution.
        
        
        
        
        
        History
        =======
        
        0.1.1 (2019-11-27)
        ---------------------
        
        * Corrected a variable name in cli.py
        * Updated the algorithm for minimally congruent serovars
        
        
        0.1.0 (2019-11-19)
        ---------------------
        
        * Initial version.
        
Keywords: bioinformatics,Salmonella,serovar,serotype,serotyping,White-Kauffmann-Le Minor
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: BSD License
Classifier: Natural Language :: English
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
