CHANGELOG.md
CITATION.cff
LICENSE
MANIFEST.in
README.md
pyproject.toml
configs/example.yaml
docs/guide/README.md
docs/guide/configuration.md
docs/guide/input.md
docs/guide/normalization.md
docs/guide/outputs.md
docs/guide/python.md
docs/guide/recipes.md
docs/guide/running.md
examples/quickstart/letters.jsonl
examples/quickstart/run.yaml
licenses/Apache-2.0.txt
licenses/BitMagic-NOTICE.txt
licenses/LMDB-OLDAP-2.8.txt
licenses/NCBI-BLAST-public-domain.txt
licenses/PCRE2-BSD-3-Clause.txt
licenses/README.md
licenses/bzip2.txt
licenses/lmdbxx-Unlicense.txt
src/textblast/__init__.py
src/textblast/align.py
src/textblast/annotate.py
src/textblast/api.py
src/textblast/cli.py
src/textblast/clip.py
src/textblast/cluster.py
src/textblast/config.py
src/textblast/defrag.py
src/textblast/encode.py
src/textblast/evaluate.py
src/textblast/export.py
src/textblast/filters.py
src/textblast/ingest.py
src/textblast/join.py
src/textblast/logs.py
src/textblast/mapping.py
src/textblast/parallel.py
src/textblast/parse.py
src/textblast/plan.py
src/textblast/post.py
src/textblast/prepare.py
src/textblast/run.py
src/textblast/sysinfo.py
src/textblast.egg-info/PKG-INFO
src/textblast.egg-info/SOURCES.txt
src/textblast.egg-info/dependency_links.txt
src/textblast.egg-info/entry_points.txt
src/textblast.egg-info/requires.txt
src/textblast.egg-info/top_level.txt
src/textblast/engine/__init__.py
src/textblast/engine/build.py
src/textblast/engine/check.py
src/textblast/engine/locate.py
src/textblast/engine/patches.py
src/textblast/engine/versions.py
src/textblast/normalize/__init__.py
src/textblast/normalize/profiles.py
src/textblast/normalize/spans.py
src/textblast/normalize/steps.py
tests/__init__.py
tests/conftest.py
tests/helpers.py
tests/test_annotate.py
tests/test_blast.py
tests/test_build_and_cli.py
tests/test_ci.py
tests/test_citation.py
tests/test_cluster.py
tests/test_corpus.py
tests/test_docs.py
tests/test_encode.py
tests/test_engine.py
tests/test_evaluate.py
tests/test_exclusions.py
tests/test_join.py
tests/test_locate.py
tests/test_logs.py
tests/test_normalize_rules.py
tests/test_parallel.py
tests/test_passim_rule.py
tests/test_patches.py
tests/test_plan.py
tests/test_post.py
tests/test_post_e2e.py
tests/test_prepare.py
tests/test_properties.py
tests/test_quickstart.py
tests/test_rename.py
tests/test_spans.py