README.md
setup.py
./data/PKL/BBS_lg_bgfr_cg0p9__cmsW9_nn__ts0p5_p20.json
./data/PKL/BBS_lg_bgfr_cg0p9__cmsW9_nn__ts0p5_p20.pkl
./matrices/LG.dat
./matrices/BLOSUM/blosum100.out
./matrices/BLOSUM/blosum30.out
./matrices/BLOSUM/blosum35.out
./matrices/BLOSUM/blosum40.out
./matrices/BLOSUM/blosum45.out
./matrices/BLOSUM/blosum50.out
./matrices/BLOSUM/blosum55.out
./matrices/BLOSUM/blosum60.out
./matrices/BLOSUM/blosum62.out
./matrices/BLOSUM/blosum65.out
./matrices/BLOSUM/blosum70.out
./matrices/BLOSUM/blosum75.out
./matrices/BLOSUM/blosum80.out
./matrices/BLOSUM/blosum85.out
./matrices/BLOSUM/blosum90.out
./matrices/BLOSUM/blosum95.out
./matrices/jp/BO.dat
./matrices/jp/benner22.dat
./matrices/jp/benner74.dat
./matrices/jp/blastn.dat
./matrices/jp/blosum100.dat
./matrices/jp/blosum30.dat
./matrices/jp/blosum35.dat
./matrices/jp/blosum40.dat
./matrices/jp/blosum45.dat
./matrices/jp/blosum50.dat
./matrices/jp/blosum55.dat
./matrices/jp/blosum60.dat
./matrices/jp/blosum62.dat
./matrices/jp/blosum65.dat
./matrices/jp/blosum70.dat
./matrices/jp/blosum75.dat
./matrices/jp/blosum80.dat
./matrices/jp/blosum85.dat
./matrices/jp/blosum90.dat
./matrices/jp/blosum95.dat
./matrices/jp/gonnet.dat
./matrices/jp/ident.dat
./matrices/jp/identity.dat
./matrices/jp/johnson.dat
./matrices/jp/miyata.dat
./matrices/jp/structure.dat
./matrices/jp/trans.dat
./matrices/structureDerived/B.dat
./matrices/structureDerived/BEHOS.dat
./matrices/structureDerived/BH.dat
./matrices/structureDerived/BO.dat
./matrices/structureDerived/BS.dat
./matrices/structureDerived/E.dat
./matrices/structureDerived/EH.dat
./matrices/structureDerived/EO.dat
./matrices/structureDerived/ES.dat
./matrices/structureDerived/H.dat
./matrices/structureDerived/O.dat
./matrices/structureDerived/S.dat
./twincons/TwinCons.py
./twincons/twcCalculateSegments.py
./twincons/twcCrossValidate.py
./twincons/twcCrossValidateTrees.py
./twincons/twcParseAlnDatabase.py
./twincons/twcSVMtest.py
./twincons/twcSVMtrain.py
./twincons/twcTreesTest.py
./twincons/twcTreesTrain.py
./twincons/twcWrapper.py
TwinCons.egg-info/PKG-INFO
TwinCons.egg-info/SOURCES.txt
TwinCons.egg-info/dependency_links.txt
TwinCons.egg-info/requires.txt
TwinCons.egg-info/top_level.txt
matrices/LG.dat
matrices/BLOSUM/blosum100.out
matrices/BLOSUM/blosum100.qij
matrices/BLOSUM/blosum100.sij
matrices/BLOSUM/blosum30.out
matrices/BLOSUM/blosum30.qij
matrices/BLOSUM/blosum30.sij
matrices/BLOSUM/blosum35.out
matrices/BLOSUM/blosum35.qij
matrices/BLOSUM/blosum35.sij
matrices/BLOSUM/blosum40.out
matrices/BLOSUM/blosum40.qij
matrices/BLOSUM/blosum40.sij
matrices/BLOSUM/blosum45.out
matrices/BLOSUM/blosum45.qij
matrices/BLOSUM/blosum45.sij
matrices/BLOSUM/blosum50.out
matrices/BLOSUM/blosum50.qij
matrices/BLOSUM/blosum50.sij
matrices/BLOSUM/blosum55.out
matrices/BLOSUM/blosum55.qij
matrices/BLOSUM/blosum55.sij
matrices/BLOSUM/blosum60.out
matrices/BLOSUM/blosum60.qij
matrices/BLOSUM/blosum60.sij
matrices/BLOSUM/blosum62.out
matrices/BLOSUM/blosum62.qij
matrices/BLOSUM/blosum62.sij
matrices/BLOSUM/blosum65.out
matrices/BLOSUM/blosum65.qij
matrices/BLOSUM/blosum65.sij
matrices/BLOSUM/blosum70.out
matrices/BLOSUM/blosum70.qij
matrices/BLOSUM/blosum70.sij
matrices/BLOSUM/blosum75.out
matrices/BLOSUM/blosum75.qij
matrices/BLOSUM/blosum75.sij
matrices/BLOSUM/blosum80.out
matrices/BLOSUM/blosum80.qij
matrices/BLOSUM/blosum80.sij
matrices/BLOSUM/blosum85.out
matrices/BLOSUM/blosum85.qij
matrices/BLOSUM/blosum85.sij
matrices/BLOSUM/blosum90.out
matrices/BLOSUM/blosum90.qij
matrices/BLOSUM/blosum90.sij
matrices/BLOSUM/blosum95.out
matrices/BLOSUM/blosum95.qij
matrices/BLOSUM/blosum95.sij
matrices/jp/BO.dat
matrices/jp/benner22.dat
matrices/jp/benner74.dat
matrices/jp/blastn.dat
matrices/jp/blosum100.dat
matrices/jp/blosum30.dat
matrices/jp/blosum35.dat
matrices/jp/blosum40.dat
matrices/jp/blosum45.dat
matrices/jp/blosum50.dat
matrices/jp/blosum55.dat
matrices/jp/blosum60.dat
matrices/jp/blosum62.dat
matrices/jp/blosum65.dat
matrices/jp/blosum70.dat
matrices/jp/blosum75.dat
matrices/jp/blosum80.dat
matrices/jp/blosum85.dat
matrices/jp/blosum90.dat
matrices/jp/blosum95.dat
matrices/jp/gonnet.dat
matrices/jp/ident.dat
matrices/jp/identity.dat
matrices/jp/johnson.dat
matrices/jp/miyata.dat
matrices/jp/structure.dat
matrices/jp/trans.dat
matrices/structureDerived/B.dat
matrices/structureDerived/BEHOS.dat
matrices/structureDerived/BH.dat
matrices/structureDerived/BO.dat
matrices/structureDerived/BS.dat
matrices/structureDerived/E.dat
matrices/structureDerived/EH.dat
matrices/structureDerived/EO.dat
matrices/structureDerived/ES.dat
matrices/structureDerived/H.dat
matrices/structureDerived/O.dat
matrices/structureDerived/S.dat
twincons/AlignmentGroup.py
twincons/MatrixInfo.py
twincons/MatrixLoad.py
twincons/SequenceWeightFromTree.py
twincons/SlidingWindow.py
twincons/TwinCons.py
twincons/__init__.py
twincons/twcCalculateSegments.py
twincons/twcCalibrate.py
twincons/twcCrossValidate.py
twincons/twcCrossValidateTrees.py
twincons/twcParseAlnDatabase.py
twincons/twcSVMtest.py
twincons/twcSVMtrain.py
twincons/twcSupportFunctions.py
twincons/twcTreesTest.py
twincons/twcTreesTrain.py
twincons/twcWrapper.py