LICENSE
README.md
pyproject.toml
setup.py
src/obnb/__init__.py
src/obnb/dataset.py
src/obnb/dataset_pyg.py
src/obnb/exception.py
src/obnb/typing.py
src/obnb.egg-info/PKG-INFO
src/obnb.egg-info/SOURCES.txt
src/obnb.egg-info/dependency_links.txt
src/obnb.egg-info/not-zip-safe
src/obnb.egg-info/requires.txt
src/obnb.egg-info/top_level.txt
src/obnb/config/__init__.py
src/obnb/config/logger_config.py
src/obnb/data/__init__.py
src/obnb/data/base.py
src/obnb/data/annotated_ontology/__init__.py
src/obnb/data/annotated_ontology/base.py
src/obnb/data/annotated_ontology/diseases.py
src/obnb/data/annotated_ontology/disgenet.py
src/obnb/data/annotated_ontology/go.py
src/obnb/data/annotated_ontology/hpo.py
src/obnb/data/annotation/__init__.py
src/obnb/data/annotation/base.py
src/obnb/data/annotation/diseases.py
src/obnb/data/annotation/disgenet.py
src/obnb/data/annotation/gene_ontology.py
src/obnb/data/annotation/human_phenotype_ontology.py
src/obnb/data/experimental/__init__.py
src/obnb/data/experimental/alevinfry.py
src/obnb/data/network/__init__.py
src/obnb/data/network/base.py
src/obnb/data/network/biogrid.py
src/obnb/data/network/bioplex.py
src/obnb/data/network/comppi.py
src/obnb/data/network/consensuspathdb.py
src/obnb/data/network/funcoup.py
src/obnb/data/network/hippie.py
src/obnb/data/network/humanbase.py
src/obnb/data/network/humannet.py
src/obnb/data/network/humap.py
src/obnb/data/network/huri.py
src/obnb/data/network/intact.py
src/obnb/data/network/omnipath.py
src/obnb/data/network/pcnet.py
src/obnb/data/network/proteomehd.py
src/obnb/data/network/signor.py
src/obnb/data/network/string.py
src/obnb/data/ontology/__init__.py
src/obnb/data/ontology/base.py
src/obnb/data/ontology/gene_ontology.py
src/obnb/data/ontology/mondo.py
src/obnb/ext/__init__.py
src/obnb/ext/grape.py
src/obnb/ext/orbital_features.py
src/obnb/ext/pecanpy.py
src/obnb/ext/sknetwork.py
src/obnb/feature/__init__.py
src/obnb/feature/base.py
src/obnb/feature/multifeat.py
src/obnb/feature/singlefeat.py
src/obnb/graph/__init__.py
src/obnb/graph/base.py
src/obnb/graph/dense.py
src/obnb/graph/ontology.py
src/obnb/graph/sparse.py
src/obnb/label/__init__.py
src/obnb/label/collection.py
src/obnb/label/filters/__init__.py
src/obnb/label/filters/base.py
src/obnb/label/filters/existence_filter.py
src/obnb/label/filters/negative_generator.py
src/obnb/label/filters/nonred.py
src/obnb/label/filters/pairwise_filter.py
src/obnb/label/filters/range_filter.py
src/obnb/label/filters/value_filter.py
src/obnb/label/split/__init__.py
src/obnb/label/split/base.py
src/obnb/label/split/holdout.py
src/obnb/label/split/partition.py
src/obnb/metric/__init__.py
src/obnb/metric/graphgym_metric.py
src/obnb/metric/standard.py
src/obnb/model/__init__.py
src/obnb/model/label_propagation.py
src/obnb/model_trainer/__init__.py
src/obnb/model_trainer/base.py
src/obnb/model_trainer/gnn.py
src/obnb/model_trainer/graphgym.py
src/obnb/model_trainer/label_propagation.py
src/obnb/model_trainer/supervised_learning.py
src/obnb/util/__init__.py
src/obnb/util/checkers.py
src/obnb/util/converter.py
src/obnb/util/cx_explorer.py
src/obnb/util/dataset_constructors.py
src/obnb/util/deprecated.py
src/obnb/util/download.py
src/obnb/util/idhandler.py
src/obnb/util/logger.py
src/obnb/util/parallel.py
src/obnb/util/path.py
src/obnb/util/registers.py
src/obnb/util/timer.py
test/test_data.py
test/test_dataset.py
test/test_graph.py
test/test_metric.py
test/test_model.py
test/test_wrapper.py