Metadata-Version: 2.1
Name: SimTissue
Version: 0.0.3
Author-email: Thomas Defard <thomas.defard@mines-paristech.fr>
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Requires-Python: >=3.8
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: anndata >=0.9.2
Requires-Dist: pandas >=1.5.3
Requires-Dist: scanpy >=1.9.1


# SimTissue

SimTissue is a python package to simulate in silico smFISH experiment.
It can generate 2D or 3D tissue with arbitrary RNA profile and cell shape.
Beside it can also sample nuclei position from real experiment and RNA profile from scRNA-seq data.
## Installation
``pip install SimTissue -r requirements.txt ``

