ampal package
=============

Submodules
----------

ampal.align module
-------------------------

.. automodule:: ampal.align
    :members:
    :undoc-members:
    :show-inheritance:

ampal.amino\_acids module
-------------------------

.. automodule:: ampal.amino_acids
    :members:
    :undoc-members:
    :show-inheritance:

ampal.ampal\_warnings module
----------------------------

.. automodule:: ampal.ampal_warnings
    :members:
    :undoc-members:
    :show-inheritance:

ampal.analyse\_protein module
-----------------------------

.. automodule:: ampal.analyse_protein
    :members:
    :undoc-members:
    :show-inheritance:

ampal.assembly module
---------------------

.. automodule:: ampal.assembly
    :members:
    :undoc-members:
    :show-inheritance:

ampal.base\_ampal module
------------------------

.. automodule:: ampal.base_ampal
    :members:
    :undoc-members:
    :show-inheritance:

ampal.data module
-----------------

.. automodule:: ampal.data
    :members:
    :undoc-members:
    :show-inheritance:

ampal.dssp module
-----------------

.. automodule:: ampal.dssp
    :members:
    :undoc-members:
    :show-inheritance:

ampal.geometry module
---------------------

.. automodule:: ampal.geometry
    :members:
    :undoc-members:
    :show-inheritance:

ampal.interactions module
-------------------------

.. automodule:: ampal.interactions
    :members:
    :undoc-members:
    :show-inheritance:

ampal.ligands module
--------------------

.. automodule:: ampal.ligands
    :members:
    :undoc-members:
    :show-inheritance:

ampal.nucleic\_acid module
--------------------------

.. automodule:: ampal.nucleic_acid
    :members:
    :undoc-members:
    :show-inheritance:

ampal.pdb\_parser module
------------------------

.. automodule:: ampal.pdb_parser
    :members:
    :undoc-members:
    :show-inheritance:

ampal.protein module
--------------------

.. automodule:: ampal.protein
    :members:
    :undoc-members:
    :show-inheritance:

ampal.pseudo\_atoms module
--------------------------

.. automodule:: ampal.pseudo_atoms
    :members:
    :undoc-members:
    :show-inheritance:


Module contents
---------------

.. automodule:: ampal
    :members:
    :undoc-members:
    :show-inheritance:
