Package csb :: Package bio :: Package io :: Module procheck :: Class ProcheckParser |
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# Class ProcheckParser

source code

Simple Prochceck Summary parser

Instance Methods
__init__(self) | source code
parse(self, fn) Returns: dicttionary of parsed quality indicatiors | source code
run(self, pdb_file) Runs procheck for the given pdbfile and parses the output. | source code

Method Details

### parse(self, fn) | source code
Parameters: `fn` (str) - source file to parse Returns: dicttionary of parsed quality indicatiors

### run(self, pdb_file) | source code
Runs procheck for the given pdbfile and parses the output. Will fail if the procheck binary is not in the path. Parameters: `pdb_file` - file to parse Returns: dict of parsed values