README.md
setup.cfg
setup.py
./metapathways/MetaPathways.py
./metapathways/__init__.py
./metapathways/annotate/__init__.py
./metapathways/annotate/fasta.py
./metapathways/annotate/genbank.py
./metapathways/annotate/location.py
./metapathways/annotate/pathologic.py
./metapathways/diagnostics/__init__.py
./metapathways/diagnostics/configuration.py
./metapathways/diagnostics/diagnoze.py
./metapathways/diagnostics/parameters.py
./metapathways/parsers/__init__.py
./metapathways/parsers/blast.py
./metapathways/parsers/fastareader.py
./metapathways/parsers/genbank.py
./metapathways/parsers/parse.py
./metapathways/pipeline/MetaPathways_gather_run_stats.py
./metapathways/pipeline/__init__.py
./metapathways/pipeline/commands.py
./metapathways/pipeline/context.py
./metapathways/pipeline/execution.py
./metapathways/pipeline/jobscreator.py
./metapathways/pipeline/metapathways.py
./metapathways/pipeline/sampledata.py
./metapathways/scripts/MetaPathways_annotate_fast.py
./metapathways/scripts/MetaPathways_annotate_fast_bypass.py
./metapathways/scripts/MetaPathways_annotate_fast_metacyc.py
./metapathways/scripts/MetaPathways_annotate_fast_threaded.py
./metapathways/scripts/MetaPathways_create_amino_sequences.py
./metapathways/scripts/MetaPathways_create_genbank_ptinput_sequin.py
./metapathways/scripts/MetaPathways_create_reports_fast.py
./metapathways/scripts/MetaPathways_create_reports_fast_mod.py
./metapathways/scripts/MetaPathways_extract_pathways.py
./metapathways/scripts/MetaPathways_filter_input.py
./metapathways/scripts/MetaPathways_func_search.py
./metapathways/scripts/MetaPathways_genbank_modifier.py
./metapathways/scripts/MetaPathways_input_gff.py
./metapathways/scripts/MetaPathways_orf_prediction.py
./metapathways/scripts/MetaPathways_parse_blast.py
./metapathways/scripts/MetaPathways_parse_blast_threaded.py
./metapathways/scripts/MetaPathways_parse_custom_hits.py
./metapathways/scripts/MetaPathways_parse_genbank.py
./metapathways/scripts/MetaPathways_preprocess_amino_input.py
./metapathways/scripts/MetaPathways_rRNA_stats_calculator.py
./metapathways/scripts/MetaPathways_refscore.py
./metapathways/scripts/MetaPathways_rpkm.py
./metapathways/scripts/MetaPathways_run_pathologic.py
./metapathways/scripts/MetaPathways_tRNA_scan.py
./metapathways/scripts/__init__.py
./metapathways/taxonomy/LCAComputation.py
./metapathways/taxonomy/MeganTree.py
./metapathways/taxonomy/__init__.py
./metapathways/test/__init__.py
./metapathways/test/test_preprocess.py
./metapathways/utils/__init__.py
./metapathways/utils/errorcodes.py
./metapathways/utils/errormessages.py
./metapathways/utils/globalcodes.py
./metapathways/utils/metapathways_utils.py
./metapathways/utils/pathwaytoolsutils.py
./metapathways/utils/sysutil.py
./metapathways/utils/utils.py
MetaPathways.egg-info/PKG-INFO
MetaPathways.egg-info/SOURCES.txt
MetaPathways.egg-info/dependency_links.txt
MetaPathways.egg-info/entry_points.txt
MetaPathways.egg-info/top_level.txt
bin/compress_by_ec