Metadata-Version: 1.2
Name: RnaChipIntegrator
Version: 2.0.0
Summary: Analyse genes against peak data, and vice versa
Home-page: https://github.com/fls-bioinformatics-core/RnaChipIntegrator
Author: Peter Briggs, Ian Donaldson, Leo Zeef
Author-email: peter.briggs@manchester.ac.uk
Maintainer: Peter Briggs
Maintainer-email: peter.briggs@manchester.ac.uk
License: Artistic License
Download-URL: https://github.com/fls-bioinformatics-core/RnaChipIntegrator/archive/v2.0.0.tar.gz
Description: RnaChipIntegrator: analysis of genes with peak data
        ===================================================
        
        .. image:: https://readthedocs.org/projects/rnachipintegrator/badge/?version=latest
           :target: https://rnachipintegrator.readthedocs.io
        
        .. image:: https://badge.fury.io/py/RnaChipIntegrator.svg
           :target: https://pypi.python.org/pypi/rnachipintegrator/
        
        .. image:: https://travis-ci.org/fls-bioinformatics-core/RnaChipIntegrator.png?branch=master
           :target: https://travis-ci.org/fls-bioinformatics-core/RnaChipIntegrator
        
        ``RnaChipIntegrator`` is a utility that performs integrated analyses
        of 'gene' data (a set of genes or other genomic features) with 'peak'
        data (a set of regions, for example ChIP peaks) to identify the genes
        nearest to each peak, and vice versa.
        
        The program was originally written specifically for ChIP-Seq and RNA-Seq
        data but works equally well for ChIP-chip and microarray expression data,
        and can also be used to integrate any set of genomic features (e.g.
        canonical genes, CpG islands) with peak data.
        
        Quick Start
        ***********
        
        Install the latest version of the program from the Python Package Index
        (PyPI)::
        
            pip install RnaChipIntegrator
        
        The simplest use of the program is::
        
            RnaChipIntegrator GENES PEAKS
        
        where ``GENES`` and ``PEAKS`` are tab-delimited files containing the
        'gene' and 'peak' data respectively.
        
        This will output two files with the nearest genes for each peak
        ("peak-centric" analysis), and the nearest peaks for each gene
        ("gene-centric" analysis).
        
        Full documentation can be found at:
        
         * http://rnachipintegrator.readthedocs.io/en/latest/
        
        Licensing
        *********
        
        This software is licensed under the Artistic License 2.0.
        
Keywords: RnaChipIntegrator
Platform: UNKNOWN
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Science/Research
Classifier: Environment :: Console
Classifier: License :: OSI Approved :: Artistic License
Classifier: Operating System :: POSIX
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Natural Language :: English
Classifier: Programming Language :: Python :: 2
Classifier: Programming Language :: Python :: 2.7
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
